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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcaagcaaactgaacccggaccttttgtgatgtgacggtacttttttctttttgcctgtagaaactaatctagtgagatgaactgccatttcagATGCATGCCGAGGTCCTGGATATTTTGTAAATTAGGCTACCAATACCATGCGACTCGTTGCTGTAGAGTAATAATGTCCTGATGTAATTCAACATGGGCA

Basic information

species Zea mays
transcript GRMZM2G057067_T04
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32795229|gb|CD947465.1|CD947465
EST:     CCAGATTGCTGAAAGCCTGAAACAGCGACAAAATTCTGATCATTTGGAAT                         ATGCATGCCGAGGTCCTGGATATTTTGTAAATTAGGCTACCAATACCATGC
genomic: CCAGATTGCTGAAAGCCTGAAACAGCGACAAAATTCTGATCATTTGGAATgtgagcaagc ... gccatttcagATGCATGCCGAGGTCCTGGATATTTTGTAAATTAGGCTACCAATACCATGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttttttctttttgcctgtagaaactaatctagtgagatgaactgccatttcagATGCATGCCGAGGTCCTGGATATTTTGTAAATTAGGCTACCAATACCATGCGACTCGTTGCTGTAGAGTAATAATGTCCTGATGTAATTCAACATGGGCA
                       aactaat  putative branch site (score: 2)
                                              ccatttc  putative PPT
     tttcttttt  TA-rich tract