1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agggagtacaacattcgtgccatccctgaacttgaaataagaaatgcactttatagtttatgacattctttgcttattagagctgcttctcttgtaccagTGTATACAAGGCTTGTCCGAAGGTGCACTTCGTCGCATTATTCTAACTGCATCAGGTGGTGCTTTCAG
species | Zea mays |
transcript | GRMZM2G056975_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAAAGTGAAAATTCTTCCAGCTGATTCTGAGCACTCTGCAATATTTCAG TGTATACAAGGCTTTGTC-GAAAGTGCACTTCGTCGCATTATTCTAACTGCEST: gi|14206809|gb|BG840487.1|BG840487
genomic: ACAAAGTGAAAATTCTTCCAGCTGATTCTGAGCACTCTGCAATATTTCAGgtaactcaca ... cttgtaccagTGTATACAAGGCTT-GTCCGAAGGTGCACTTCGTCGCATTATTCTAACTGC
EST: ACAAAGTGAAAATTCTTCCAGCTGATTCTGAGCACTCTGCAATATTTCAG TGTATACAAGGCTTGTCCGAAGGTGCACTTCGTCGCATTATTCTAACTGCAEST: gi|211496438|gb|FL049443.1|FL049443
genomic: ACAAAGTGAAAATTCTTCCAGCTGATTCTGAGCACTCTGCAATATTTCAGgtaactcaca ... cttgtaccagTGTATACAAGGCTTGTCCGAAGGTGCACTTCGTCGCATTATTCTAACTGCA
EST: ACAAAGTGAAAATTCTTCCAGCTGATTCTGAGCACTCTGCAATATTTCAG TGTATACAAGGCTTGTCCGAAGGTGCACTTCGTCGCATTATTCTAACTGCA
genomic: ACAAAGTGAAAATTCTTCCAGCTGATTCTGAGCACTCTGCAATATTTCAGgtaactcaca ... cttgtaccagTGTATACAAGGCTTGTCCGAAGGTGCACTTCGTCGCATTATTCTAACTGCA
gcactttatagtttatgacattctttgcttattagagctgcttctcttgtaccagTGTATACAAGGCTTGTCCGAAGGTGCACTTCGTCGCATTATTCTAACTGCATCAGGTGGTGCTTTCAG
ctgcttctctt CT-rich tract
ttatagtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agggagtacaacattcgtgccatccctgaacttgaaataagaaatgcactttatagtttatgacattctttgcttattagagctgcttctcttgtaccagTGTATACAAGGCTTGTCCGAAGGTGCACTTCGTCGCATTATTCTAACTGCATCAGGTGGTGCTTTCAG
- - - tacaaca
- - - - - - - -cgtgcca
- - - - - - - - - - - -ccctgaa
- - - - - - - - - - - - - - - - -gaaataag
- - - - - - - - - - - - - - - - - - - - - aatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgctt