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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agggagtacaacattcgtgccatccctgaacttgaaataagaaatgcactttatagtttatgacattctttgcttattagagctgcttctcttgtaccagTGTATACAAGGCTTGTCCGAAGGTGCACTTCGTCGCATTATTCTAACTGCATCAGGTGGTGCTTTCAG

Basic information

species Zea mays
transcript GRMZM2G056975_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G056975_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g01710.1 (Oryza sativa), 3'ss of exon 6
agggagtacaacattcgtgccatccctgaacttgaaataagaaatgcactttatagtttatgac------attctttgcttattagagctgcttctcttgtacca--gTGTATACAAGGCTTGTCCGAAGGTGCACTTCGTCGCATTATTCTAACTGCATCAGGTGGTGCTTTCAG
      |  |||| |    | |      |   | | ||      |||   ||||||||||          ||| | |||| ||| |   |    ||||  || ||  |||||||||||||||| ||||||| |||||||| ||||||||| | |||||||||||||||||||||||
------tttaacacttaaacaaagtagcag--taagatgtatgttgcttgttatagtttactgttgttctattatatgctgatttgcagtttccctctactatcatagTGTATACAAGGCTTGCCCGAAGGAGCACTTCGCCGCATTATTTTGACTGCATCAGGTGGTGCTTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71445035|gb|DR826085.1|DR826085
EST:     ACAAAGTGAAAATTCTTCCAGCTGATTCTGAGCACTCTGCAATATTTCAG                         TGTATACAAGGCTTTGTC-GAAAGTGCACTTCGTCGCATTATTCTAACTGC
genomic: ACAAAGTGAAAATTCTTCCAGCTGATTCTGAGCACTCTGCAATATTTCAGgtaactcaca ... cttgtaccagTGTATACAAGGCTT-GTCCGAAGGTGCACTTCGTCGCATTATTCTAACTGC
EST: gi|14206809|gb|BG840487.1|BG840487
EST:     ACAAAGTGAAAATTCTTCCAGCTGATTCTGAGCACTCTGCAATATTTCAG                         TGTATACAAGGCTTGTCCGAAGGTGCACTTCGTCGCATTATTCTAACTGCA
genomic: ACAAAGTGAAAATTCTTCCAGCTGATTCTGAGCACTCTGCAATATTTCAGgtaactcaca ... cttgtaccagTGTATACAAGGCTTGTCCGAAGGTGCACTTCGTCGCATTATTCTAACTGCA
EST: gi|211496438|gb|FL049443.1|FL049443
EST:     ACAAAGTGAAAATTCTTCCAGCTGATTCTGAGCACTCTGCAATATTTCAG                         TGTATACAAGGCTTGTCCGAAGGTGCACTTCGTCGCATTATTCTAACTGCA
genomic: ACAAAGTGAAAATTCTTCCAGCTGATTCTGAGCACTCTGCAATATTTCAGgtaactcaca ... cttgtaccagTGTATACAAGGCTTGTCCGAAGGTGCACTTCGTCGCATTATTCTAACTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcactttatagtttatgacattctttgcttattagagctgcttctcttgtaccagTGTATACAAGGCTTGTCCGAAGGTGCACTTCGTCGCATTATTCTAACTGCATCAGGTGGTGCTTTCAG
                                     ctgcttctctt  CT-rich tract
     ttatagtttat  TA-rich tract