1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgatcctatttcgtttgatgatcaccatgtgtgttgatttcaaaagaataaacagccaagctaaaaggatcattctctttctagAATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGGAACAAGTGGATCCCTGGATGGGCAACAAAGGTTGGTTATCAAAGGAAGA
species | Zea mays |
transcript | GRMZM2G056462_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAAC AATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGGEST: gi|71417947|gb|DR804264.1|DR804264
genomic: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAACgtatgatcct ... ctctttctagAATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGG
EST: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAAC AATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGGEST: gi|211142063|gb|FL081585.1|FL081585
genomic: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAACgtatgatcct ... ctctttctagAATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGG
EST: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAAC AATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGGEST: gi|211142066|gb|FL081588.1|FL081588
genomic: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAACgtatgatcct ... ctctttctagAATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGG
EST: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAAC AATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGGEST: gi|60349693|gb|DN216666.1|DN216666
genomic: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAACgtatgatcct ... ctctttctagAATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGG
EST: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAAC AATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGGEST: gi|29577103|gb|CB617215.1|CB617215
genomic: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAACgtatgatcct ... ctctttctagAATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGG
EST: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAAC AATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGGEST: gi|29947496|gb|CB816686.1|CB816686
genomic: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAACgtatgatcct ... ctctttctagAATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGG
EST: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAAC AATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGGEST: gi|60338551|gb|DN205524.1|DN205524
genomic: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAACgtatgatcct ... ctctttctagAATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGG
EST: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAAC AATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGGEST: gi|32933168|gb|CF037980.1|CF037980
genomic: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAACgtatgatcct ... ctctttctagAATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGG
EST: GGACTTGTGCAAAAC AATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGGEST: gi|76291709|gb|DV031277.1|DV031277
genomic: GGACTTGTGCAAAACgtatgatcct ... ctctttctagAATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGG
EST: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAAC AATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGGEST: gi|29947331|gb|CB816599.1|CB816599
genomic: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAACgtatgatcct ... ctctttctagAATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGG
EST: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAAC AATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGGEST: gi|30031975|gb|CB833826.1|CB833826
genomic: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAACgtatgatcct ... ctctttctagAATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGG
EST: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAAC AATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGG
genomic: GAAGGAACAAAGAAGACAGTTTTTGTGAACTTCATGGACTTGTGCAAAACgtatgatcct ... ctctttctagAATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGG
tgtgttgatttcaaaagaataaacagccaagctaaaaggatcattctctttctagAATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGGAACAAGTGGATCCCTGGATGGGCAACAAAGGTTGGTTATCAAAGGAAGA
agctaaa putative branch site (score: 84)
tcattctctttct putative PPT
atttcaaaagaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatcctatttcgtttgatgatcaccatgtgtgttgatttcaaaagaataaacagccaagctaaaaggatcattctctttctagAATGCATAGGCAACCAGAACATGTGATGATGTTCTTGCTTGCTGAGATGGGAACAAGTGGATCCCTGGATGGGCAACAAAGGTTGGTTATCAAAGGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA