Sequence
atgc intronic sequence ATGC exonic sequence...actactctaattccatacatttggattgtcaattactgtgtcatatcttcagtggcttattgttatttctgttattctgtacctccttttgtctcaacagATAGCTGCGGATGTTAACATCGATGAGGTTGCTCGGAGGACAGAAGGCTATAGTGGAGATGACTTGACAAATGTTTGCCGTGATGCTTCAATGAACGGTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G054715_T07 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g49000.1 (Oryza sativa), 3'ss of exon 6
actactctaattccatacatttggattgtcaattactgtgtcatatcttca-gtggcttattgttatttctgttattctgtacctcct--tttgtctcaacagATAGCTGCGGATGTTAACATCGATGAGGTTGCTCGGAGGACAGAAGGCTATAGTGGAGATGACTTGACAAATGTTTGCCGTGATGCTTCAATGAACGGTA
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---cgtgaaaatgaccaaatactgttcgctacttgtcatctttgatgaaaaagtactgtgccatatcttctgttgtttgttaacgcctcttttatatcggcagGTTGCTACCGATGTTGACATAGATGAAGTTGCACGGAGGACAGAAGGCTATAGTGGTGACGACCTTACAAATGTTTGCCGTGATGCTTCAATGAATGGCA
upper sequence: GRMZM2G054715_T07 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA07G03820.1 (Glycine max), 3'ss of exon 6
actactctaattccatacatttggattgtca--attactgtgtcatatcttcagtggcttattgttatttctgttattctgtacctccttttgtctcaacagATAGCTGCGGATGTTAACATCGATGAGGTTGCTCGGAGGACAGAAGGCTATAGTGGAGATGACTTGACAAATGTTTGCCGTGATGCTTCAATGAACGGTA
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actgtgagaacagtttatggaaagggcagcagaataatgatgctaaaacttggattattgattattgttattattg--ctgattgtacttgtctttcaccagGTGGCACCTGATGTCAATATAGACGAAGTGGCTCGCCGGACAGAGGGATATAGTGGAGATGATTTGACAAATGTCTGTCGCGATGCTTCCTTGAATGGTA
upper sequence: GRMZM2G054715_T07 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA08G22210.1 (Glycine max), 3'ss of exon 6
---actactctaatt-ccatacatttggattgtcaattactgtgtcatatcttcagtggcttattgttatttctgttattctgtacctccttttgtctcaacagATAGCTGCGGATGTTAACATCGATGAGGTTGCTCGGAGGACAGAAGGCTATAGTGGAGATGACTTGACAAATGTTTGCCGTGATGCTTCAATGAACGGTA
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tcagtcactaaacttactgtgagaacagtttatggaa-agggcagcagaatcatgatg-ctaaaacttattattattg--ctgattgtacttgtctttcaccagGTGGCACCTGATGTCAATATAGACGAAGTGGCTCGCCGGACAGAGGGATATAGTGGAGATGATTTGACAAATGTCTGTCGCGATGCTTCCTTGAATGGTA
upper sequence: GRMZM2G054715_T07 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA13G43840.1 (Glycine max), 3'ss of exon 6
---------------------------------------------------------actactctaattcca-tacatttggattgtcaattactgtgtc-atatcttcagtggcttattgttatttctgttattctgtacctccttttgtctca-acagATAGCTGCGGATGTTAACATCGATGAGGTTGCTCGGAGGACAGAAGGCTATAGTGGAGATGACTTGACAAATGTTTGCCGTGATGCTTCAATGAACGGTA
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gtagaggcaagttaggatgtgatttttagtatgaataataaaatgatttatgttatcttgagtagaattcaagcatatatagtttaccataaacaaaatggatgaaattgagtgtttaagaagacatgcaataa---gtgtatagtgttgcaccatgcagGTGGCCCCTGATGTGAACATAGATGAAGTGGCTCGACGGACAGAGGGGTATAGTGGAGATGACTTGACAGATGTATGCCGTGATGCTTCCATGAATGGTA
upper sequence: GRMZM2G054715_T07 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA15G01510.1 (Glycine max), 3'ss of exon 4
----actactctaattccatac-atttggattgtc---aattactgtgtcatatcttcagtgg---cttattgttatttctgttattctgtacc-tccttttgtctca-acagATAGCTGCGGATGTTAACATCGATGAGGTTGCTCGGAGGACAGAAGGCTATAGTGGAGATGACTTGACAAATGTTTGCCGTGATGCTTCAATGAACGGTA
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gcaagttattaggatgttatattacttggatattctttaattgatttttagtattaataataaaaattgagcgtttaagaagacaataagtagtgttgtgttgcaccatgcagGTGTCCCCTGATGTGAACATAGATGAAGTGGCTCGAAGGACAGAGGGGTATAGTGGAGATGACTTGACAAATGTATGTCGTGATGCTTCTCTGAATGGTA
upper sequence: GRMZM2G054715_T07 (Zea mays), 3'ss of exon 1
lower sequence: Vv09s0002g05260.t01 (Vitis vinifera), 3'ss of exon 6
--actactctaattccatacatttggattgtcaattactgtgtcatatcttcagtggcttatt-gttatttctgttattctgtacctccttttgtctcaacagATAGCTGCGGATGTTAACATCGATGAGGTTGCTCGGAGGACAGAAGGCTATAGTGGAGATGACTTGACAAATGTTTGCCGTGATGCTTCAATGAACGGTA
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ttgctcattgattttaacctacttgacttaacaatca-tgtactgtatactccttattaagctagatatgtct-ttattgggttgttgtattcatct-atcagGTGGCTCCTGATGTAAATATCGACGAAGTGGCTCGCCGCACTGAGGGGTACAGTGGAGATGATCTGACAAATGTTTGCCGGGATGCTTCCTTAAATGGCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211073705|gb|FL043069.1|FL043069EST: GCGCTTAATTTTGTGGAATCACATGTACATGCCTGCAGCATAACCATTAT ATAGCTGCGGATGTTAACATCGATGAGGTTGCTCGGAGGACAGAAGGCTAT
genomic: GCGCTTAATTTTGTGGAATCACATGTACATGCCTGCAGCATAACCATTATgtatgttgcc ... gtctcaacagATAGCTGCGGATGTTAACATCGATGAGGTTGCTCGGAGGACAGAAGGCTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttcagtggcttattgttatttctgttattctgtacctccttttgtctcaacagATAGCTGCGGATGTTAACATCGATGAGGTTGCTCGGAGGACAGAAGGCTATAGTGGAGATGACTTGACAAATGTTTGCCGTGATGCTTCAATGAACGGTA
ttctgtacctcctttt CT-rich tract
ttattgttatttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
actactctaattccatacatttggattgtcaattactgtgtcatatcttcagtggcttattgttatttctgttattctgtacctccttttgtctcaacagATAGCTGCGGATGTTAACATCGATGAGGTTGCTCGGAGGACAGAAGGCTATAGTGGAGATGACTTGACAAATGTTTGCCGTGATGCTTCAATGAACGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG