1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acatatgatgaccgcagcatcattaaacagctctaggtgtttattgctatatgtcaggatttattatgacaatgagttacctttttttgtggaattctagGCCCTAGATTTAATAAGGGGAAAGAATATACTGTTGCTGATGGATTCCTCCTTAGAAGGGCAGTATGCTAATGAAGATGCTTCGAAATTGGTTGATCTTG
species | Zea mays |
transcript | GRMZM2G054634_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCAT GCCCTAGATTTAATAAGGGGAAAGAATATACTGTTGCTGATGGATTCCTCCEST: gi|211485328|gb|FL295172.1|FL295172
genomic: GAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCATgtatgcttcc ... ggaattctagGCCCTAGATTTAATAAGGGGAAAGAATATACTGTTGCTGATGGATTCCTCC
EST: GAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCAT GCCCTAGATTTAATAAGGGGAAAGAATATACTGTTGCTGATGGATTCCTCCEST: gi|211485330|gb|FL295174.1|FL295174
genomic: GAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCATgtatgcttcc ... ggaattctagGCCCTAGATTTAATAAGGGGAAAGAATATACTGTTGCTGATGGATTCCTCC
EST: GAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCAT GCCCTAGATTTAATAAGGGGAAAGAATATACTGTTGCTGATGGATTCCTCCEST: gi|211485329|gb|FL295173.1|FL295173
genomic: GAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCATgtatgcttcc ... ggaattctagGCCCTAGATTTAATAAGGGGAAAGAATATACTGTTGCTGATGGATTCCTCC
EST: GAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCAT GCCCTAGATTTAATAAGGGGAAAGAATATACTGTTGCTGATGGATTCCTCCEST: gi|71439297|gb|DR820347.1|DR820347
genomic: GAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCATgtatgcttcc ... ggaattctagGCCCTAGATTTAATAAGGGGAAAGAATATACTGTTGCTGATGGATTCCTCC
EST: GAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCAT GCCCTAGATTTAATAAGGGGAAAGAATATACTGTTGCTGATGGATTCCTCCEST: gi|78122641|gb|DV541025.1|DV541025
genomic: GAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCATgtatgcttcc ... ggaattctagGCCCTAGATTTAATAAGGGGAAAGAATATACTGTTGCTGATGGATTCCTCC
EST: GAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCAT GCCCTAGATTTAATAAGGGGAAAGAATATACTGTTGCTGATGGATTCCTCCEST: gi|32930139|gb|CF034951.1|CF034951
genomic: GAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCATgtatgcttcc ... ggaattctagGCCCTAGATTTAATAAGGGGAAAGAATATACTGTTGCTGATGGATTCCTCC
EST: GAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCAT GCCCTAGATTTAATAAGGGGAAAGAATATACTGTTGCTGATGGATTCCTCC
genomic: GAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCATgtatgcttcc ... ggaattctagGCCCTAGATTTAATAAGGGGAAAGAATATACTGTTGCTGATGGATTCCTCC
gctatatgtcaggatttattatgacaatgagttacctttttttgtggaattctagGCCCTAGATTTAATAAGGGGAAAGAATATACTGTTGCTGATGGATTCCTCCTTAGAAGGGCAGTATGCTAATGAAGATGCTTCGAAATTGGTTGATCTTG
atttattatgacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatatgatgaccgcagcatcattaaacagctctaggtgtttattgctatatgtcaggatttattatgacaatgagttacctttttttgtggaattctagGCCCTAGATTTAATAAGGGGAAAGAATATACTGTTGCTGATGGATTCCTCCTTAGAAGGGCAGTATGCTAATGAAGATGCTTCGAAATTGGTTGATCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG