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...tacatctaaaacttgttacaaatttgaatgatttttgtgctaaccatctgccccagtatgtcatcgttaaggttctttattctttgattaactgatgcagGTTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATTTGGTTCTTTGCAT
species | Zea mays |
transcript | GRMZM2G052926_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAAGCTTATGGATTTGTGGAGAAGATTGTCACATTTCAAAAGTCAGCTG GTTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATEST: gi|93284255|gb|EB676519.1|EB676519
genomic: CAAAGCTTATGGATTTGTGGAGAAGATTGTCACATTTCAAAAGTCAGCTGgttagatttt ... actgatgcagGTTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCAT
EST: CAAAGCTTATGGATTTGTGGAGAAAATTGTCACATTTTAAAAGTCAGCTG GTTTTTAAGCTCTTATTCAGTATCACTCCGGGC-AAGAAGCTGGTGGAEST: gi|67014377|gb|CO443126.1|CO443126
genomic: CAAAGCTTATGGATTTGTGGAGAAGATTGTCACATTTCAAAAGTCAGCTGgttagatttt ... actgatgcagGTTTTCAAGCTCTTATTCAGTATCACTC-GCGCCAAGAAGCTG-TGGA
EST: CAAAGCTTATGGATTTGTGGAGAAGATTGTCACATTTCAAAAGTCAGCTG GTTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATEST: gi|31358368|gb|CD442725.1|CD442725
genomic: CAAAGCTTATGGATTTGTGGAGAAGATTGTCACATTTCAAAAGTCAGCTGgttagatttt ... actgatgcagGTTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCAT
EST: CAAAGCTTATGGATTTGTGGAGAAGATTGTCACATTTCAAAAGTCAGCTG GTTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATEST: gi|76013333|gb|DT940503.1|DT940503
genomic: CAAAGCTTATGGATTTGTGGAGAAGATTGTCACATTTCAAAAGTCAGCTGgttagatttt ... actgatgcagGTTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCAT
EST: CAAAGCTTATGGATTTGTGGAGAAGATTGTCACATTTCAAAAGTCAGCTG GTTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATEST: gi|78087001|gb|DV515394.1|DV515394
genomic: CAAAGCTTATGGATTTGTGGAGAAGATTGTCACATTTCAAAAGTCAGCTGgttagatttt ... actgatgcagGTTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCAT
EST: CAAAGCTTATGGATTTGTGGAGAAGATTGTCACATTTCAAAAGTCAGCTG GTTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATEST: gi|31250253|gb|CD219277.1|CD219277
genomic: CAAAGCTTATGGATTTGTGGAGAAGATTGTCACATTTCAAAAGTCAGCTGgttagatttt ... actgatgcagGTTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCAT
EST: AAAGCTTATGGATTTGTGGAGAAGATTGTCACATTTCAAAAAGTCAGCTG GNTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATEST: gi|78080905|gb|DV509317.1|DV509317
genomic: AAAGCTTATGGATTTGTGGAGAAGATTGTCACATTTCAAAA-GTCAGCTGgttagatttt ... actgatgcagGTTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCAT
EST: CAAAGCTTATGGATTTGTGGAGAAGATTGTCACATTTCAAAAGTCAGCTG GTTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATEST: gi|32943654|gb|CF048473.1|CF048473
genomic: CAAAGCTTATGGATTTGTGGAGAAGATTGTCACATTTCAAAAGTCAGCTGgttagatttt ... actgatgcagGTTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCAT
EST: CAAAGCTTATGGATTTGTGGAGAAGATTGTCACATTTCAAAAGTCAGCTG GTTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCAT
genomic: CAAAGCTTATGGATTTGTGGAGAAGATTGTCACATTTCAAAAGTCAGCTGgttagatttt ... actgatgcagGTTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCAT
atctgccccagtatgtcatcgttaaggttctttattctttgattaactgatgcagGTTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATTTGGTTCTTTGCAT
tttattctttgattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacatctaaaacttgttacaaatttgaatgatttttgtgctaaccatctgccccagtatgtcatcgttaaggttctttattctttgattaactgatgcagGTTTTCAAGCTCTTATTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATTTGGTTCTTTGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - -ttgaatg
- - - - - - - - - - - - - - - - - -tgtgcta
- - - - - - - - - - - - - - - - - - - - - - catctgc