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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctcctttctatgtgcagccataaatcttgaatgatactcttatttacatatctgaaacttttgcagACTGCTGTGCAATCAAAAGGGCTGAGGGATGATACCACCTGTATTGTTGTTGATATAATAGTAGAAAAAAACAACTCTTCCATGCCACTTGCTAAAAGGC

Basic information

species Zea mays
transcript GRMZM2G052699_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052699_T01 (Zea mays), 3'ss of exon 6
lower sequence: AT1G47380.1 (Arabidopsis thaliana), 3'ss of exon 7
-------------gtaacctcctttctatgtgcagcca-taaatcttgaatgatactcttat-----ttacatatctga--aacttttgcagACTGCTGTGCAATCAAAAGGGCTGAGGGATGATACCACCTGTATTGTTGTTGATATAATAGTA--GAAAAAAACAACT-CTTCCATGCCACTTGCTAAAAGGC
              | || |  ||| ||  |  |  |  || || ||   |  | |  ||||      |  |||| | |  |     | |||   ||||||     ||||||  |  | |||||||| ||||||||||||||||||||| |   |    ||||| |  || ||||| |||| | | | ||||   
gtatagtatctgaattactttattt-tagatatattctctacatattctttcttgcctttatagtaccttgatattttattactccatacagGAAGCTGTGGGTAAAAAAGGTATTCGTGATGATACAACCTGTATTGTTGTTGATATATTGCCACTAGAAAAACCGGCTGCTTCCGTGCCGCCTCCAAAAA---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76292056|gb|DV031624.1|DV031624
EST:     ACTGTTCACGTGAACTTCCTCCAGTGCCTGCAGCTGAGCAAATCGTTAAA                         ACTGCTGTGCAATCAAAAGGGCTGAGGGATGATACCACCTGTATTGTTGTT
genomic: ACTGTTCACGTGAACTTCCTCCAGTGCCTGCAGCTGAGCAAATCGTTAAAgtaacctcct ... acttttgcagACTGCTGTGCAATCAAAAGGGCTGAGGGATGATACCACCTGTATTGTTGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcagccataaatcttgaatgatactcttatttacatatctgaaacttttgcagACTGCTGTGCAATCAAAAGGGCTGAGGGATGATACCACCTGTATTGTTGTTGATATAATAGTAGAAAAAAACAACTCTTCCATGCCACTTGCTAAAAGGC
                                              cttttgc  CT-rich tract
                          tcttatttacatat  TA-rich tract