Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttgtattttaataaaatggtgttttttctttccactgccatctaattcttccattctgtgaaatatatctttcttcctttaccaacaaacttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAAAGATATTGTGCACTGCCGTGCGGAAATTAG

Basic information

species Zea mays
transcript GRMZM2G052546_T01
intron # 6
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052546_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g01750.5 (Oryza sativa), 3'ss of exon 5
-------atttgtattttaataaaatggt-gttttttctttccactgccatctaattcttccattctgtgaa-atatatctttcttcctttaccaacaaacttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAAAGATATTGTGCACTGCCGTGCGGAAATTAG
       |||| |||  | | |  || || | || || |||||| |||   | |||   | | ||| ||||| |  | | || | ||||| ||||        |||||||||||||||||| |||||| ||||||||||||| |||| ||||||||  |||||||| | |||||| ||||| ||||||||
tagttctattt-tatactgacagcatagttgcttgttgtttccattgctgcccaatgtgttctttcagtgaatagttgtattccatccttaacca--------gttcagATATTTTGGAGTTGACATCTGTGCCATTCAAGAATATTGTCTACAATGTAAAGATATAGAGCACTGTCGTGCCGAAATTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148952817|gb|EC898809.2|EC898809
EST:     AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA                         ATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
genomic: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGAgtatccccac ... acttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
EST: gi|148970824|gb|EE021591.2|EE021591
EST:     AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA                         ATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
genomic: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGAgtatccccac ... acttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
EST: gi|15427195|gb|BI543017.1|BI543017
EST:     AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA                         ATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
genomic: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGAgtatccccac ... acttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
EST: gi|21621474|gb|BQ619480.1|BQ619480
EST:     AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA                         ATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
genomic: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGAgtatccccac ... acttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
EST: gi|67023551|gb|CO452300.1|CO452300
EST:     AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA                         ATATTTTAGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
genomic: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGAgtatccccac ... acttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
EST: gi|211183157|gb|FL428740.1|FL428740
EST:     AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA                         ATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
genomic: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGAgtatccccac ... acttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
EST: gi|71435430|gb|DR816480.1|DR816480
EST:     AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA                         ATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
genomic: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGAgtatccccac ... acttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
EST: gi|76290045|gb|DV029613.1|DV029613
EST:     AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA                         ATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
genomic: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGAgtatccccac ... acttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
EST: gi|211478786|gb|FL377818.1|FL377818
EST:     AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA                         ATATTTTGGAGTCGACATCCGTGCCATTCACGATTATTCTCTACAATTCAC
genomic: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGAgtatccccac ... acttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
EST: gi|76914764|gb|DV165677.1|DV165677
EST:     AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA                         ATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
genomic: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGAgtatccccac ... acttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
EST: gi|74234762|gb|DT642676.1|DT642676
EST:     AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA                         ATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
genomic: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGAgtatccccac ... acttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
EST: gi|149081546|gb|EE170685.2|EE170685
EST:     AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA                         ATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
genomic: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGAgtatccccac ... acttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
EST: gi|148967268|gb|EE018472.2|EE018472
EST:     AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA                         ATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
genomic: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGAgtatccccac ... acttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
EST: gi|211266638|gb|FL405762.1|FL405762
EST:     AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA                         ATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
genomic: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGAgtatccccac ... acttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
EST: gi|148934585|gb|EC878634.2|EC878634
EST:     AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA                         ATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
genomic: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGAgtatccccac ... acttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
EST: gi|91876121|gb|EB406078.1|EB406078
EST:     AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA                         ATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
genomic: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGAgtatccccac ... acttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattcttccattctgtgaaatatatctttcttcctttaccaacaaacttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAAAGATATTGTGCACTGCCGTGCGGAAATTAG
                              ttcctttac  putative branch site 
                                              cttgttc  putative PPT
                 aaatatatctttctt  TA-rich tract