1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaacccttatactggacataaattttgcatgctgtgtagtttatgttccccaaccccaacgtatacataaacggttctttccatcatttcatagGCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGGGAATTGTCATTCGAGAAGAACACCAGGACAAAAGGCGGATG
species | Zea mays |
transcript | GRMZM2G052479_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCG GCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGGEST: gi|94472720|gb|EB701678.1|EB701678
genomic: ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCGgtaaccctta ... catttcatagGCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
EST: ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCG GCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGGEST: gi|211089074|gb|FL456421.1|FL456421
genomic: ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCGgtaaccctta ... catttcatagGCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
EST: TGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCG GCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGGEST: gi|149098517|gb|EE184497.2|EE184497
genomic: TGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCGgtaaccctta ... catttcatagGCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
EST: ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCG GCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGGEST: gi|148938520|gb|EC882841.2|EC882841
genomic: ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCGgtaaccctta ... catttcatagGCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
EST: ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCG GCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGGEST: gi|101386886|gb|EB815460.1|EB815460
genomic: ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCGgtaaccctta ... catttcatagGCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
EST: ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCG GCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGGEST: gi|71760018|gb|DR957955.1|DR957955
genomic: ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCGgtaaccctta ... catttcatagGCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
EST: ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCG GCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
genomic: ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCGgtaaccctta ... catttcatagGCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
tttatgttccccaaccccaacgtatacataaacggttctttccatcatttcatagGCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGGGAATTGTCATTCGAGAAGAACACCAGGACAAAAGGCGGATG
ttctttccatcatttc CT-rich tract
tatacataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacccttatactggacataaattttgcatgctgtgtagtttatgttccccaaccccaacgtatacataaacggttctttccatcatttcatagGCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGGGAATTGTCATTCGAGAAGAACACCAGGACAAAAGGCGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC