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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaatggtttgctaatgccatgcgttgttagttatattgatttctaagccgctgtttaggattttaagttcgtcttgtttatgttgttttgagcagGAAGGAGAGGGGGCCGGTGCATCTGGAGGAGCGATAAGCTTAGCAGAGTATCTAGGAACCAACGTAGCCGACCACATCCCGGAAACCCCCAACAACCTGT

Basic information

species Zea mays
transcript GRMZM2G052476_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052476_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g55890.1 (Oryza sativa), 3'ss of exon 6
-------------------------------------------------------------------gtaat-taatggtttgctaatgccatgcgttgttagttatattgatttctaagccg--ctgtttaggattttaagttcgtcttgtttatgt-tgttttgagcagGAAGGAGAGGGGGCCGGTGCATCTGGAGGAGCGATAAGCTTAGCAGAGTATCTAGGAACCAACGTAGCCGACCACATCCCGGAAACCCCCAACAACCTGT------
                                                                     | | |  |  |  | | ||||    | |     ||| |     ||||      |  |||| || |||| ||||||  |  | ||||||  | || |||||||||||||||| |  | |  |||      |||| |||||||||||||||||||||||| || || ||||| |||||||| || ||||| ||||||||||| |      
gtaatgattcacactgcatttttttttactaattacaagtcctcgtgcatgataagaaatgatgggtacagtgtggttatgagattatgcgcaacataacaggttgtgaaagtttccgtctggacctgtataagattctaagttgcttgtttttatgaattttgtgagcagGAAGGAGAGAGTACTGCAGCA------GGAGTGATAAGCTTAGCAGAGTATCTAGGCACTAATGTAGCTGACCACATTCCTGAAACTCCCAACAACCTATCGGAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctaagccgctgtttaggattttaagttcgtcttgtttatgttgttttgagcagGAAGGAGAGGGGGCCGGTGCATCTGGAGGAGCGATAAGCTTAGCAGAGTATCTAGGAACCAACGTAGCCGACCACATCCCGGAAACCCCCAACAACCTGT
                                          ttgtttt  CT-rich tract
                   attttaagtt  TA-rich tract