1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtctttccaaaatcgtatattaacgcatctaagtcagaaaggaatgaaagaatgacgaattcaaatggataaaaaaatatatgctcacatcttttgaagtgacatagtgcaaccaatctaaggtatgtgcctggagttcacctgttgcttttatctgcagGGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTATTGCAAATGGGCTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAG
species | Zea mays |
transcript | GRMZM2G051842_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGG GGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTAEST: gi|60338856|gb|DN205829.1|DN205829
genomic: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGGgtgagtcttt ... ttatctgcagGGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTA
EST: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGG GGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTAEST: gi|29543849|gb|CB604229.1|CB604229
genomic: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGGgtgagtcttt ... ttatctgcagGGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTA
EST: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGG GGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTAEST: gi|31612067|gb|CD568689.1|CD568689
genomic: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGGgtgagtcttt ... ttatctgcagGGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTA
EST: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGG GGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTAEST: gi|29945521|gb|CB815681.1|CB815681
genomic: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGGgtgagtcttt ... ttatctgcagGGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTA
EST: GAGGATGAAGCTAGAGAGGTTATAGG GGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTAEST: gi|29945789|gb|CB815820.1|CB815820
genomic: GAGGATGAAGCTAGAGAGGTTATAGGgtgagtcttt ... ttatctgcagGGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTA
EST: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGG GGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTAEST: gi|148928772|gb|EC873535.2|EC873535
genomic: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGGgtgagtcttt ... ttatctgcagGGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTA
EST: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGG GGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTAEST: gi|71762333|gb|DR960270.1|DR960270
genomic: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGGgtgagtcttt ... ttatctgcagGGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTA
EST: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGG GGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTAEST: gi|78105422|gb|DV523840.1|DV523840
genomic: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGGgtgagtcttt ... ttatctgcagGGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTA
EST: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGG GGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTTTTGGGCAAGTAEST: gi|211123067|gb|FL031406.1|FL031406
genomic: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGGgtgagtcttt ... ttatctgcagGGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTA
EST: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGG GGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTAEST: gi|29543893|gb|CB604273.1|CB604273
genomic: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGGgtgagtcttt ... ttatctgcagGGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTA
EST: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGG GGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTAEST: gi|78103938|gb|DV522356.1|DV522356
genomic: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGGgtgagtcttt ... ttatctgcagGGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTA
EST: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGG GGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTAEST: gi|101385265|gb|EB814678.1|EB814678
genomic: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGGgtgagtcttt ... ttatctgcagGGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTA
EST: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGG GGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTAEST: gi|149088934|gb|EE178077.2|EE178077
genomic: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGGgtgagtcttt ... ttatctgcagGGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTA
EST: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGG GGGAGGTCTGGAATEST: gi|148959742|gb|EC905640.2|EC905640
genomic: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGGgtgagtcttt ... ttatctgcagGGGAGGTCTGGAAT
EST: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGG GGGAGGTCTGGAATCEST: gi|30032244|gb|CB834095.1|CB834095
genomic: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGGgtgagtcttt ... ttatctgcagGGGAGGTCTGGAATC
EST: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGG GGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTA
genomic: AACATTGACCTTTGCTTCGCCAATGAGGATGAAGCTAGAGAGGTTATAGGgtgagtcttt ... ttatctgcagGGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTA
agtgcaaccaatctaaggtatgtgcctggagttcacctgttgcttttatctgcagGGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTATTGCAAATGGGCTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAG
cttttatct CT-rich tract
ttttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtctttccaaaatcgtatattaacgcatctaagtcagaaaggaatgaaagaatgacgaattcaaatggataaaaaaatatatgctcacatcttttgaagtgacatagtgcaaccaatctaaggtatgtgcctggagttcacctgttgcttttatctgcagGGGAGGTCTGGAATCAGATCCAGAGGAGGCGCTTGCGTTCTTGGGCAAGTATTGCAAATGGGCTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG