1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttagcttggagagtttactgacatttgcaccttcttgtttattaactgggaatgatggtaaagttgtttcataatgcttgtgacagATAGCGAAGGGTCTGCGTCCTTTGATACTTGGTTTTATTCTGTGTGCTTCCCACAGCCGAACATTTTCCATGTTAAATGGATATGGTGCTCCCCTGCAGA
species | Zea mays |
transcript | GRMZM2G051262_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGATTTTTTCCATGACAAATATTCATCTGATCAGTCTATTTTTGAAAAG ATAGCGAAGGGTCTGCGTCCTTTGATACTTGGTTTTATTCTGTGTGCTTCCEST: gi|19822128|gb|BQ048152.1|BQ048152
genomic: CTGATTTTTTCCATGACAAATATTCATCTGATCAGTCTATTTTTGAAAAGgttagcttgg ... cttgtgacagATAGCGAAGGGTCTGCGTCCTTTGATACTTGGTTTTATTCTGTGTGCTTCC
EST: CTGATTTTTTCCATGACAAATATTCATCTGATCAGTCTATTTTTGAAAAG ATAGCGAAGGGTCTGCGTCCTTTGATACTGGGTTTTATTCTGTGTGCTTCCEST: gi|19822043|gb|BQ048067.1|BQ048067
genomic: CTGATTTTTTCCATGACAAATATTCATCTGATCAGTCTATTTTTGAAAAGgttagcttgg ... cttgtgacagATAGCGAAGGGTCTGCGTCCTTTGATACTTGGTTTTATTCTGTGTGCTTCC
EST: CTGATTTTTTCCATGACAAATATTCATCTGATCAGTCTATTTTTGAAAAG ATAGCGAAGGGTCTGCGTCCTTTGATACTTGGTTTTATTCTGTGTGCTTCCEST: gi|32915944|gb|CF020756.1|CF020756
genomic: CTGATTTTTTCCATGACAAATATTCATCTGATCAGTCTATTTTTGAAAAGgttagcttgg ... cttgtgacagATAGCGAAGGGTCTGCGTCCTTTGATACTTGGTTTTATTCTGTGTGCTTCC
EST: ATATTCATCTGATCAGTCTATTTTTGAAAAG ATAGCGAAGGGTCTGCGTCCTTTGATACTTGGTTTTATTCTGTGTGCTTCC
genomic: ATATTCATCTGATCAGTCTATTTTTGAAAAGgttagcttgg ... cttgtgacagATAGCGAAGGGTCTGCGTCCTTTGATACTTGGTTTTATTCTGTGTGCTTCC
ttcttgtttattaactgggaatgatggtaaagttgtttcataatgcttgtgacagATAGCGAAGGGTCTGCGTCCTTTGATACTTGGTTTTATTCTGTGTGCTTCCCACAGCCGAACATTTTCCATGTTAAATGGATATGGTGCTCCCCTGCAGA
tattaac putative branch site (score: 68)
tttattaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcttggagagtttactgacatttgcaccttcttgtttattaactgggaatgatggtaaagttgtttcataatgcttgtgacagATAGCGAAGGGTCTGCGTCCTTTGATACTTGGTTTTATTCTGTGTGCTTCCCACAGCCGAACATTTTCCATGTTAAATGGATATGGTGCTCCCCTGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG