1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtactgtctcttttctatgccataaagcttactgcttttcacttattgctttttcattgatgcttagtattttatggtcctagatcttgggtgcaagtttctgaagctaacactatcagtttgatgctttggtgatctcatttgcctcttcatcatgtagGTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAG
species | Zea mays |
transcript | GRMZM2G051043_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATG GTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAGEST: gi|78180075|gb|DV550448.1|DV550448
genomic: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATGgtactgtctc ... catcatgtagGTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAG
EST: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATG GTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAGEST: gi|108823990|gb|EC277998.1|EC277998
genomic: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATGgtactgtctc ... catcatgtagGTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAG
EST: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATG GTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAAGEST: gi|108953255|gb|EC364659.1|EC364659
genomic: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATGgtactgtctc ... catcatgtagGTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGA-G
EST: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATG GTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAGEST: gi|61236519|gb|DN586269.1|DN586269
genomic: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATGgtactgtctc ... catcatgtagGTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAG
EST: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATG GTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAGEST: gi|12046008|gb|BF728043.1|BF728043
genomic: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATGgtactgtctc ... catcatgtagGTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAG
EST: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATG GTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAGEST: gi|38502629|gb|CF972489.1|CF972489
genomic: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATGgtactgtctc ... catcatgtagGTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAG
EST: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATG GTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAGEST: gi|4730460|gb|AI649626.1|AI649626
genomic: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATGgtactgtctc ... catcatgtagGTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAG
EST: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATG GTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAGEST: gi|33771172|gb|CF272833.1|CF272833
genomic: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATGgtactgtctc ... catcatgtagGTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAG
EST: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATG GTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAGEST: gi|6827432|gb|AW331075.1|AW331075
genomic: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATGgtactgtctc ... catcatgtagGTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAG
EST: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATG GTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAG
genomic: AGAAGGAAATGGTCATGCGAACTGTCTATTGTACAAACATAGATAAGATGgtactgtctc ... catcatgtagGTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAG
gctaacactatcagtttgatgctttggtgatctcatttgcctcttcatcatgtagGTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAG
tctcatttgcctcttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtctcttttctatgccataaagcttactgcttttcacttattgctttttcattgatgcttagtattttatggtcctagatcttgggtgcaagtttctgaagctaacactatcagtttgatgctttggtgatctcatttgcctcttcatcatgtagGTTACTCAGTTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
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