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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgttaattcagcttctagatgattgttagttaccgttgatttttggtcgccataaactggaattatgttaatgcccattttctttacagAGGCTCTTGCTCACGTTTGGAATACGAAACTGTGCTGAACCGAACTTGAAATGTTTACATTGCCCATCTGATGTTTCTGCTTCTGAACATTCTTTAGGCA

Basic information

species Zea mays
transcript GRMZM2G050961_T02
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148943634|gb|EC888698.2|EC888698
EST:     CCAACGGCATGAACTTATCTTGCCCCCACTTTGTTGTATGCCATTTGAAC                         AGGCTCTTGCTCACGTTTGGAATACGAAACTGTGCTGAACCGAACTTGAAA
genomic: CCAACGGCATGAACTTATCTTGCCCCCACTTTGTTGTATGCCATTTGAACgttcgttaat ... ttctttacagAGGCTCTTGCTCACGTTTGGAATACGAAACTGTGCTGAACCGAACTTGAAA
EST: gi|148943633|gb|EC888697.2|EC888697
EST:     CCAACGGCATGAACTTATCTTGCCCCCACTTTGTTGTATGCCATTTGAAC                         AGGCTCTTGCTCACGTTTGGAATACGAAACTGTGCTGAACCGAACTTGAAA
genomic: CCAACGGCATGAACTTATCTTGCCCCCACTTTGTTGTATGCCATTTGAACgttcgttaat ... ttctttacagAGGCTCTTGCTCACGTTTGGAATACGAAACTGTGCTGAACCGAACTTGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgatttttggtcgccataaactggaattatgttaatgcccattttctttacagAGGCTCTTGCTCACGTTTGGAATACGAAACTGTGCTGAACCGAACTTGAAATGTTTACATTGCCCATCTGATGTTTCTGCTTCTGAACATTCTTTAGGCA
                               tgttaat  putative branch site (score: 3)
                                     tgcccattttcttt  CT-rich tract
                          aattatgttaat  TA-rich tract