1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggctctgccctaaacctcatgctgtgttccaagtgtttttatttattatgattgtttttgtgcttgaagtgattgtttttgtcacaataaaaaaatgcagGGTCTTCATGTGGGCCTGAACTTGGCTGTTGCTATTGCCTTACATAACATACCAGAG
species | Zea mays |
transcript | GRMZM2G050484_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTTGCATAATCTTCCAGAGGGAATGGCTGTATTTCTTGGATCTGTCAAG GGTCTTCATGTGGGCCTGAACTTGGCTGTTGCTATTGCCTTACATAACATAEST: gi|71308419|gb|DR790442.1|DR790442
genomic: GCTTGCATAATCTTCCAGAGGGAATGGCTGTATTTCTTGGATCTGTCAAGgtaatacctt ... aaaaatgcagGGTCTTCATGTGGGCCTGAACTTGGCTGTTGCTATTGCCTTACATAACATA
EST: GCTTGCATAATCTTCCAGAGGGAATGGCTGTATTTCTTGGATCTGTCAAG GGTCTTCATGTGGGCCTGAACTTGGCTGTTGCTATTGCCTTACATAACATAEST: gi|71300310|gb|DR786224.1|DR786224
genomic: GCTTGCATAATCTTCCAGAGGGAATGGCTGTATTTCTTGGATCTGTCAAGgtaatacctt ... aaaaatgcagGGTCTTCATGTGGGCCTGAACTTGGCTGTTGCTATTGCCTTACATAACATA
EST: GCTTGCATAATCTTCCAGAGGGAATGGCTGTATTTCTTGGATCTGTCAAG GGTCTTCATGTGGGCCTGAACTTGGCTGTTGCTATTGCCTTACATAACATAEST: gi|89762575|gb|DY690101.1|DY690101
genomic: GCTTGCATAATCTTCCAGAGGGAATGGCTGTATTTCTTGGATCTGTCAAGgtaatacctt ... aaaaatgcagGGTCTTCATGTGGGCCTGAACTTGGCTGTTGCTATTGCCTTACATAACATA
EST: GCTTGCATAATCTTCCAGAGGGAATGGCTGTATTTCTTGGATCTGTCAAG GGTCTTCATGTGGGCCTGAACTTGGCTGTTGCTATTGCCTTACATAACATAEST: gi|211448870|gb|FL218800.1|FL218800
genomic: GCTTGCATAATCTTCCAGAGGGAATGGCTGTATTTCTTGGATCTGTCAAGgtaatacctt ... aaaaatgcagGGTCTTCATGTGGGCCTGAACTTGGCTGTTGCTATTGCCTTACATAACATA
EST: GCTTGCATAATCTTCCAGAGGGAATGGCTGTATTTCTTGGATCTGTCAAG GGTCTTCATGTGGGCCTGAACTTGGCTGTTGCTATTGCCTTACATAACATA
genomic: GCTTGCATAATCTTCCAGAGGGAATGGCTGTATTTCTTGGATCTGTCAAGgtaatacctt ... aaaaatgcagGGTCTTCATGTGGGCCTGAACTTGGCTGTTGCTATTGCCTTACATAACATA
ttatgattgtttttgtgcttgaagtgattgtttttgtcacaataaaaaaatgcagGGTCTTCATGTGGGCCTGAACTTGGCTGTTGCTATTGCCTTACATAACATACCAGAG
tttttgtcacaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggctctgccctaaacctcatgctgtgttccaagtgtttttatttattatgattgtttttgtgcttgaagtgattgtttttgtcacaataaaaaaatgcagGGTCTTCATGTGGGCCTGAACTTGGCTGTTGCTATTGCCTTACATAACATACCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - -tgcccta
- - - - - - - - -catgctg
- - - - - - - - - - - - - - - - -tgttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgattg