1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaacttgctataattcattgtctcataagaatgtggatgtcttctatgtggaagctgcagtttttttgagtcactactgttgttactagtttatttactgcttttatgattttgctccaaggtttaatgtttagtaccttgactgcagGACATGACTAAAGTCTCAAGTCATTTTGTTCGTGGAAATGATCCAAAAAAGTTCGCTTCTATGCTGGTGAACTTTATGGGCAAG
species | Zea mays |
transcript | GRMZM2G048804_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCTTCACGTTATGTTAGCAGAATACATATATTCGGAATCTCCAGAGACG GACATGGCTAAAGTCTCAAGTCATTTTGTTCGTGGAAATGATCCAAAAAAGEST: gi|71773197|gb|DR971110.1|DR971110
genomic: AGCTTCACGTTATGTTAGCAGAATACATATATTCGGAATCTCCAGAGACGgtaacttgct ... ttgactgcagGACATGACTAAAGTCTCAAGTCATTTTGTTCGTGGAAATGATCCAAAAAAG
EST: AGCTTCACGTTATGTTAGCAGAATACATATATTCGGAATCTCCAGAGACG GACATGACTAAAGTCTCAAGTCATTTTGTTCGTGGAAATGATCCAAAAAAGEST: gi|33467112|gb|CF244161.1|CF244161
genomic: AGCTTCACGTTATGTTAGCAGAATACATATATTCGGAATCTCCAGAGACGgtaacttgct ... ttgactgcagGACATGACTAAAGTCTCAAGTCATTTTGTTCGTGGAAATGATCCAAAAAAG
EST: AGCTTCACGTTATGTTAGCAGAATACATATATTCGGAATCTCCAGAGACG GACATGACTAAAGTCTCAAGTCATTTTEST: gi|113704317|gb|EE681821.1|EE681821
genomic: AGCTTCACGTTATGTTAGCAGAATACATATATTCGGAATCTCCAGAGACGgtaacttgct ... ttgactgcagGACATGACTAAAGTCTCAAGTCATTTT
EST: TTAGCAGAATACATATATTCGGAATTTCCAGAGACG GACATGATTAAAGTCTCAAGTTCATTTTGTTCGTGGAAATGATCCAAAAAAEST: gi|74236760|gb|DT644674.1|DT644674
genomic: TTAGCAGAATACATATATTCGGAATCTCCAGAGACGgtaacttgct ... ttgactgcagGACATGACTAAAGTCTCAAG-TCATTTTGTTCGTGGAAATGATCCAAAAAA
EST: AGCTTCACGTTATGTTAGCAGAATACATATATTCGGAATCTCCAGAGACG GACATGACTAAAGTCTCAAGTCATTTTGTTCGTGGAAATGATCCAAAAAAGEST: gi|32911197|gb|CF016009.1|CF016009
genomic: AGCTTCACGTTATGTTAGCAGAATACATATATTCGGAATCTCCAGAGACGgtaacttgct ... ttgactgcagGACATGACTAAAGTCTCAAGTCATTTTGTTCGTGGAAATGATCCAAAAAAG
EST: AGCTTCACGTTATGTTAGCAGAATACATATATTCGGAATCTCCAGAGACG GACATGACTAAAGTCTCAAGTCATTTTGTTCGTGGAAATGATCCAAAAAAGEST: gi|31349428|gb|CD433785.1|CD433785
genomic: AGCTTCACGTTATGTTAGCAGAATACATATATTCGGAATCTCCAGAGACGgtaacttgct ... ttgactgcagGACATGACTAAAGTCTCAAGTCATTTTGTTCGTGGAAATGATCCAAAAAAG
EST: AGCTTCACGTTATGTTAGCAGAATACATATATTCGGAATCTCCAGAGACG GACATGACTAAAGTCTCAAGTCATTTTGTTCGTGGAAATGATCCAAAAAAGEST: gi|32850448|gb|CD990129.1|CD990129
genomic: AGCTTCACGTTATGTTAGCAGAATACATATATTCGGAATCTCCAGAGACGgtaacttgct ... ttgactgcagGACATGACTAAAGTCTCAAGTCATTTTGTTCGTGGAAATGATCCAAAAAAG
EST: AGCTTCACGTTATGTTAGCAGAATACATATATTCGGAATCTCCAGAGACG GACATGACTAAAGTCTCAAGTCATTTTGTTCGTGGAAATGATCCAAAAAAGEST: gi|74236761|gb|DT644675.1|DT644675
genomic: AGCTTCACGTTATGTTAGCAGAATACATATATTCGGAATCTCCAGAGACGgtaacttgct ... ttgactgcagGACATGACTAAAGTCTCAAGTCATTTTGTTCGTGGAAATGATCCAAAAAAG
EST: AGCTTCACGTTATGTTAGCAGAATACATATATTCGGAATCTCCAGAGACG GACATGACTAAAGTCTCAAGTCATTTTGTTCGTGGAAATGATCCAAAAAAG
genomic: AGCTTCACGTTATGTTAGCAGAATACATATATTCGGAATCTCCAGAGACGgtaacttgct ... ttgactgcagGACATGACTAAAGTCTCAAGTCATTTTGTTCGTGGAAATGATCCAAAAAAG
tttactgcttttatgattttgctccaaggtttaatgtttagtaccttgactgcagGACATGACTAAAGTCTCAAGTCATTTTGTTCGTGGAAATGATCCAAAAAAGTTCGCTTCTATGCTGGTGAACTTTATGGGCAAG
ccttgac putative branch site (score: 95)
tttaatgtttagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttgctataattcattgtctcataagaatgtggatgtcttctatgtggaagctgcagtttttttgagtcactactgttgttactagtttatttactgcttttatgattttgctccaaggtttaatgtttagtaccttgactgcagGACATGACTAAAGTCTCAAGTCATTTTGTTCGTGGAAATGATCCAAAAAAGTTCGCTTCTATGCTGGTGAACTTTATGGGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG