Sequence
atgc intronic sequence ATGC exonic sequencegtgagggatatacgatatttggattggcaatttttccgtctgcctatttttttgtctctatttttatggtcttttttatgccagATGATGGGAAACTACAAGCAGAGTCAGACTCTGGTGAATTCTGGGTCCTTTTTGGAGGTTTTGCACCAATTGGGAAAAAAACTGTGAGTGATGATGATGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G047310_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA10G21350.2 (Glycine max), 3'ss of exon 5
gtgagggatatacgatatttggattggcaatttttccgtc-------tgcctatttttttgtctctatttttatgg--tcttttttatgc--cagATGATGGGAAACTACAAGCAGAGTCAGACTCTGGTGAATTCTGGGTCCTTTTTGGAGGTTTTGCACCAATTGGGAAAAAAACTGTGAGTGATGATGATGT
|| ||| | | |||| | | || | |||| || ||| ||| ||||| | | || || ||| | | |||| ||||| ||| || | | ||||||||||| |||||||| |||||||| ||||| |||||||| || |||||||| || | ||||| |||||| |
gtaaggcaattttcctattatgtatttcagtatttctgttcttccaatgcacattcatttgttttttacttcataaaatctatcccacattgcagACGATGGAAAATTAGACACTGAGTCAGACTCAGGTGAATTTTGGGTCCTCTTTGGTGGTTTTGCTCCCATTGGGAAGAAGGTAATCAGTGAGGATGATAT
upper sequence: GRMZM2G047310_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA02G32100.1 (Glycine max), 3'ss of exon 4
gtgagggatatacgatatttggattggcaatttttccgtctgcc-----tatttttttgtctctatttttatggtctttttt----atgccagATGATGGGAAACTACAAGCAGAGTCAGACTCTGGTGAATTCTGGGTCCTTTTTGGAGGTTTTGCACCAATTGGGAAAAAAACTGTGAGTGATGATGATGT
|| ||| | | |||| | | || | |||| || | | |||||||| | || || || | | | || ||||||||||| ||| || | | ||||||||||| ||||| || |||||||| ||||| |||||||| || |||||||| || | ||||| |||||| |
gtaaggcaatttttctattatgtattccagtatttctgttcttcatctgcaattttttgtttttaacttcataaaatctatcccacattccagATGATGGAAAATTAGACACTGAGTCAGACTCAGGTGAGTTTTGGGTCCTCTTTGGTGGTTTTGCTCCCATTGGGAAGAAGGTAATTAGTGAGGATGATAT
upper sequence: GRMZM2G047310_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA03G29280.1 (Glycine max), 3'ss of exon 5
-----------------------------------gtgagggatatacgat---atttggattggcaatttttccgtctgcctatttt--tttgtctctatttttat---ggtcttttttatgccagATGATGGGAAACTACAAGCAGAGTCAGACTCTGGTGAATTCTGGGTCCTTTTTGGAGGTTTTGCACCAATTGGGAAAAAAACTGTGAGTGATGATGATGT
||| | | || |||| || | | || ||| || |||||| ||||| | | | || ||| | || |||||||||| || || | | ||||||||||| |||||||| ||||| || ||||| |||||||| || |||||||| || | | ||||| |||||| |
gtaagggcacaaggcacatgttttcctgtaacttgatgaaaagcttgccatgtgattttgaata-tatgttctccaagtgtgtattttgatttgtttgtgactataaaaaggtatcccacattgcagATGATGGAAAGCTGGATACTGAGTCAGACTCAGGTGAATTTTGGGTTCTCTTTGGTGGTTTTGCTCCCATTGGGAAGAAGATAATTAGTGAGGATGATAT
upper sequence: GRMZM2G047310_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA19G32010.1 (Glycine max), 3'ss of exon 6
-----------------------------------gtgagggatatacgatat----ttggattggcaatttttccgtctgcctatttttttgtctctatttttat---ggtcttttttatgccagATGATGGGAAACTACAAGCAGAGTCAGACTCTGGTGAATTCTGGGTCCTTTTTGGAGGTTTTGCACCAATTGGGAAAAAAACTGTGAGTGATGATGATGT
||| ||| || | ||| || || | || || | || ||||| | | | || ||| | || |||||||||| || || | | ||||||||||| |||||||| ||||| || ||||| |||||||| || |||||||| || | ||||| |||||| |
gtaagggcaaaaggcacatgttttcccatcacttgatgaaaagcctaccatgtgattttgaatatatgatctccaagtgtgtattttgatttgtttgtgactataaaaaggtgtcccacattgcagATGATGGCAAGCTGGATACTGAGTCAGACTCAGGTGAATTTTGGGTTCTCTTTGGTGGTTTTGCTCCCATTGGGAAGAAGGTAATTAGTGAGGATGATAT
upper sequence: GRMZM2G047310_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 5
---------------------------------------------------------------------gtgagggatatacgatatttggattggcaatttttccgtctgcctatttttttgtctctatttttatggtcttttttatgccagATGATGGGAAACTACAAGCAGAGTCAGACTCTGGTGAATTCTGGGTCCTTTTTGGAGGTTTTGCACCAATTGGGAAAAAAACTGTGAGTGATGATGATGT
|| | | |||| ||| || ||| ||| | || | | | | ||| | ||| |||||||||||||| || || || ||||| ||||| ||||||||||||||||| ||||| |||||||| || ||||| ||||| || | || ||||||||
gtaagagcacatgcattaataacttgctgatgttagcttcgcttttagtacttatgtattcaatctctgaacagagctcatttgcattttcattcttaacatttgtaattgctactcttcattcattaacgtaaatgatgtttgcaatgccagATGATGGAAAGCTGGTTGCTGAGTCTGACTCAGGTGAATTCTGGGTCCTGTTTGGTGGTTTTGCTCCCATTGGCAAAAAGGTTGCCACCGAAGATGATGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76284001|gb|DV023569.1|DV023569EST: ACATTTAAAGGAGAAATACCATGGGGGTGTTTGCGATGTTGCCATCGTTG ATGATGGGAAACTACAAGCAGAGTCAGACTCTGGTGAATTCTGGGTCCTTT
genomic: ACATTTAAAGGAGAAATACCATGGGGGTGTTTGCGATGTTGCCATCGTTGgtgagggata ... tttatgccagATGATGGGAAACTACAAGCAGAGTCAGACTCTGGTGAATTCTGGGTCCTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttttccgtctgcctatttttttgtctctatttttatggtcttttttatgccagATGATGGGAAACTACAAGCAGAGTCAGACTCTGGTGAATTCTGGGTCCTTTTTGGAGGTTTTGCACCAATTGGGAAAAAAACTGTGAGTGATGATGATGT
tcttttttat CT-rich tract
tatttttttgtctcta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagggatatacgatatttggattggcaatttttccgtctgcctatttttttgtctctatttttatggtcttttttatgccagATGATGGGAAACTACAAGCAGAGTCAGACTCTGGTGAATTCTGGGTCCTTTTTGGAGGTTTTGCACCAATTGGGAAAAAAACTGTGAGTGATGATGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG