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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcactgtccttctcttaagcattctgtagctgtttctgctcttccaatgtaggatcatttgttaacgatgtctagtgtcataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCATGCCATCACTG

Basic information

species Zea mays
transcript GRMZM2G046804_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G046804_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os08g03290.3 (Oryza sativa), 3'ss of exon 5
gtgcactgtccttctcttaagcattctgtagctgtttctgctcttccaatgtaggatcatttgttaacgatgtctagtgtcataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCATGCCATCACTG
||    |    | |   | |  ||| | ||  |     ||  |||    | | |  |  ||  || ||         | ||||  |  ||||||||||||||||||| || ||| | |||||| |||||||||||||||||||||||||||
gtatttttctttccgagtgacaattttctactttcagttggacttttggtttgg--ttcttaattgac-----tcgttatcatccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG

upper sequence: GRMZM2G046804_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA04G36860.2 (Glycine max), 3'ss of exon 5
gtgcactgtccttctcttaagcattctg---tagctgtttctgctcttccaatgtaggatcatttgttaacgatgtctagtgtca-taaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCATGCCATCACTG
      | || |  |||  |  |||||    |     |||    | ||  | | |   ||    |  |||   | ||| |  | | |    ||||| ||| ||||||  || ||||||||||||||||||||||| ||||||||| |||||||||
-----gtttcatattctggacaattctaacatgttgattttgaatttttgactattatatttagtcctaattgtttcttgcctaaattttgcagGTTATTAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG

upper sequence: GRMZM2G046804_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA06G18120.1 (Glycine max), 3'ss of exon 6
gtgcactgtccttctcttaagcattctgtagctgtttctg-ctcttccaatgtaggatcatttgttaacgatgtctagtgtca-taaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCATGCCATCACTG
|| |  | | ||   |    | | |     | || || || || ||  | |||   ||    |  |||   | ||| || | | |    ||||| ||  ||||||  || ||||||||||||||||||||||| ||||||||| |||||||||
gttccatattctggacaatggaactaacacgttgattttgactatttgactgttatatgtagtcctaattgtttcttgtctaaattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG

upper sequence: GRMZM2G046804_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA06G18110.5 (Glycine max), 3'ss of exon 6
gtgcactgtccttctcttaagcattctgtagctgtttctgctcttccaatgtaggatcatttgttaacgatgtctagtgtca-taaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCATGCCATCACTG
||   |  | |  |   |     ||   | | | ||| ||   |     || |  || ||  ||      ||| |  ||||| |    ||||| ||  ||||||  || ||||||||||||||||||||||| ||||||||| ||||||| |
gtttgcaattcagcagattc-tgtttaatggatttttttgtgttgtttgtg-attattata-gtccttattgtttcttgtcaattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACCG

upper sequence: GRMZM2G046804_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA04G36870.1 (Glycine max), 3'ss of exon 6
gtgcactgtccttctcttaagcattctgtagctgtttctgctcttccaatgtaggatcattt--gttaacgatgtctagtgtca-taaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCATGCCATCACTG
      |  |  |           | | ||   | || |  |  |      |  ||  |||   ||      ||| |  ||||| |    ||||| ||  ||||||  || ||||||||||||||||||||||| ||||||||| |||||||||
----gtttgcaattcaccggattctgtttaatggattttttttgtgttggttgtgactattatagtccttactgtttcttgtcaattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG

upper sequence: GRMZM2G046804_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv14s0171g00440.t01 (Vitis vinifera), 3'ss of exon 5
---gtgcactgtccttctcttaagca--ttctgtagctgtttctgctcttccaatgtaggatcatttgttaacgatgtctagtgtcataaac-----cagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCATGCCATCACTG
    |  |   |     |   || ||  | |     |||    ||  |     |   |   |   |  |     ||| ||  ||  |||||      |||||||| |||||||| || || |||||||||||| | ||||| ||||| ||| |||||||||
tttatttataattaagttaaaaaacaaataccacctctgcaattgagccattgactgaattttgatcctatgttatgcctcttgaaataaatttggacagGTCATCCATGACAAATTTGGTATTGTTGAGGGTCTTATGACCACTGTCCATTCCATCACTG

upper sequence: GRMZM2G046804_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv01s0010g02460.t01 (Vitis vinifera), 3'ss of exon 6
-gtgcactgtccttctcttaagcattctgtagctgtttctgctcttccaatgtaggatcatttgttaacgatgtcta-gtgtcataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCATGCCATCACTG
  |||   |     |  |  |   |  | ||  | ||  |||   |    ||| |  |||||   | |   | |||| |||  ||    ||||| ||| ||||||  || ||||||||||||||| | ||||| |||||||| ||||||||||
gttgcttcgatacccattgtattttgatctaagttttattgcaacttgtttgttgt-tcattgccttagattttctatgtgaaattttacagGTTATTAATGACAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28909578|gb|CB330997.1|CB330997
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACT
EST: gi|211113423|gb|FL350252.1|FL350252
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|22546521|gb|BU098832.1|BU098832
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGGTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|67010641|gb|CO439390.1|CO439390
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|31354568|gb|CD438925.1|CD438925
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|67018046|gb|CO446795.1|CO446795
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|211233489|gb|FL365274.1|FL365274
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTT
EST: gi|211540838|gb|FL337854.1|FL337854
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGGTTGATGANCA-CTGTTCA
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGA-CAACTGTTCA
EST: gi|5268978|gb|AI770942.1|AI770942
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATT
EST: gi|60345182|gb|DN212155.1|DN212155
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|24769334|gb|CA404463.1|CA404463
EST:     CCCTTGCTAAG                         GTCATTCATGACAACTTCGGCA-TGTTGAGGGTTTGATGACAACTGTTCAT
genomic: CCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|5555432|gb|AI881383.1|AI881383
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|31361353|gb|CD445710.1|CD445710
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|21987384|gb|BQ778912.1|BQ778912
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|31349499|gb|CD433856.1|CD433856
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|31350904|gb|CD435261.1|CD435261
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|31360701|gb|CD445058.1|CD445058
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTG
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTG
EST: gi|211411813|gb|FL328777.1|FL328777
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTTGTTGA
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATT-GTTGA
EST: gi|19351639|gb|BM896171.1|BM896171
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|211302550|gb|FL361802.1|FL361802
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|148954918|gb|EC900406.2|EC900406
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|9254907|gb|BE345375.1|BE345375
EST:     TGTTTCCAATGCTAGCTGCACCACAAACTNG-CTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TGTTTCCAATGCTAGCTGCACCACAAACT-GCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|211139580|gb|FL058247.1|FL058247
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTTGTTGAGGGTTTGATGACAACTGGTCA
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATT-GTTGAGGGTTTGATGACAACTGTTCA
EST: gi|32857299|gb|CD996980.1|CD996980
EST:     TTGTTTCCAATGCTAGCTGCACCGCAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|67012091|gb|CO440840.1|CO440840
EST:     GCTAGCTGCTCCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: GCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|211316093|gb|FL326569.1|FL326569
EST:     TTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|31361363|gb|CD445720.1|CD445720
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|211522132|gb|FL314750.1|FL314750
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|211354556|gb|FL342066.1|FL342066
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|13150186|gb|BG320508.1|BG320508
EST:     TGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|23357616|gb|BU645265.1|BU645265
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|211052102|gb|FL315733.1|FL315733
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCG
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCG
EST: gi|211082971|gb|FL307147.1|FL307147
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|9732321|gb|BE511073.1|BE511073
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCGCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|30087284|gb|CB885492.1|CB885492
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|31362532|gb|CD446889.1|CD446889
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|31558039|gb|CD527251.1|CD527251
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATT
EST: gi|71308967|gb|DR790749.1|DR790749
EST:     TGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGGTTGATGACAACTGTTCAT
genomic: TGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCC-TTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|67026764|gb|CO455513.1|CO455513
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|149081130|gb|EE170237.2|EE170237
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|67011147|gb|CO439896.1|CO439896
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|31353199|gb|CD437556.1|CD437556
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|31355693|gb|CD440050.1|CD440050
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|60348140|gb|DN215113.1|DN215113
EST:     ACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAATTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: ACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|67034393|gb|CO462943.1|CO462943
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|32909152|gb|CF013964.1|CF013964
EST:     TGTTTCCAATGCTAGCTGCACCACAAA-TGGCTGGTTTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TGTTTCCAATGCTAGCTGCACCACAAACTGCCTTG-CTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|211372668|gb|FL327038.1|FL327038
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|21760133|gb|BQ635674.1|BQ635674
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|31558535|gb|CD527747.1|CD527747
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|31354523|gb|CD438880.1|CD438880
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|9733294|gb|BE512046.1|BE512046
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|31350908|gb|CD435265.1|CD435265
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|31351701|gb|CD436058.1|CD436058
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|31909953|gb|CD651178.1|CD651178
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|71764031|gb|DR961968.1|DR961968
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|211336707|gb|FL058023.1|FL058023
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCNGCATTGGTTGAGGGTTTGATGANCAACTGT-C
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTG-TTGAGGGTTTGATGA-CAACTGTTC
EST: gi|32851318|gb|CD990999.1|CD990999
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|60354143|gb|DN221116.1|DN221116
EST:     CCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: CCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|213170177|gb|FM193576.1|FM193576
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTNGATGACNNCTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|60348867|gb|DN215840.1|DN215840
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|31354389|gb|CD438746.1|CD438746
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|60345577|gb|DN212550.1|DN212550
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|32943642|gb|CF048461.1|CF048461
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|31356070|gb|CD440427.1|CD440427
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|149086311|gb|EE175852.2|EE175852
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|18661723|gb|BM501546.1|BM501546
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGCTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|211165170|gb|FL324147.1|FL324147
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|60340489|gb|DN207462.1|DN207462
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|71438948|gb|DR819998.1|DR819998
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|211541250|gb|FL353984.1|FL353984
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|211453026|gb|FL325278.1|FL325278
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|149055197|gb|EE156119.2|EE156119
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|31361354|gb|CD445711.1|CD445711
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|211137686|gb|FL058211.1|FL058211
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GKCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGKTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|56691582|gb|CX129485.1|CX129485
EST:     CCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: CCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
EST: gi|21891715|gb|BQ744928.1|BQ744928
EST:     TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAG                         GTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT
genomic: TTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtc ... cataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgctcttccaatgtaggatcatttgttaacgatgtctagtgtcataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCATGCCATCACTG
                          tgttaac  putative branch site (score: 2)
                       atttgttaa  TA-rich tract