1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagaatttattaaagctttcaattccttgtggtattgtttgtgacaatcaagttgaaaaggcttgcgtcaatgaatctagGCTTTTGAGAAAATGATCTCTGGTGTGTATCTTGGGGAAATTGCTAGATTGGTATTCCAAGGAATGGCTCAAGAATCAGATTTATTTGGTCCATCTGTGA
species | Zea mays |
transcript | GRMZM2G046686_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCAATATGATCAA G-TTTTGGGAAAATGATTTCTGGTG-GTATCTTTGGGAAATTGCTAGATT-EST: gi|211285823|gb|FL376864.1|FL376864
genomic: TCAATATGATCAAgtaagaattt ... atgaatctagGCTTTTGAGAAAATGATCTCTGGTGTGTATCTTGGGGAAATTGCTAGATTG
EST: CTCCTTATGACATATGCACCAGTGAAGCAAAACGCAATCAATATGATCAA GCTTTTGAGAAAATGATCTCTGGTGTGTATCTTGGGGAAATTGCTAGATTG
genomic: CTCCTTATGACATATGCACCAGTGAAGCAAAACGCAATCAATATGATCAAgtaagaattt ... atgaatctagGCTTTTGAGAAAATGATCTCTGGTGTGTATCTTGGGGAAATTGCTAGATTG
cttgtggtattgtttgtgacaatcaagttgaaaaggcttgcgtcaatgaatctagGCTTTTGAGAAAATGATCTCTGGTGTGTATCTTGGGGAAATTGCTAGATTGGTATTCCAAGGAATGGCTCAAGAATCAGATTTATTTGGTCCATCTGTGA
tattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaatttattaaagctttcaattccttgtggtattgtttgtgacaatcaagttgaaaaggcttgcgtcaatgaatctagGCTTTTGAGAAAATGATCTCTGGTGTGTATCTTGGGGAAATTGCTAGATTGGTATTCCAAGGAATGGCTCAAGAATCAGATTTATTTGGTCCATCTGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA