1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acttgactgtaattcatgtgttataataattggactctttacttgtataccgtaaatctttgatccacatgttaatcagttccttatgctgctttgtcagATTCCTGGTGAACCGAACATATCTTACATATGCTCTCGTTACTATCGTGCCCCTGAGCTCATATTTGGTGCGACGGAGTATACAAGTTCAATAGACATAT
species | Zea mays |
transcript | GRMZM2G045330_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAAGTCCTG ATTCCTGGTGAACCGAACATATCTTACATATGCTCTCGTTACTATCGTGCCEST: gi|31911111|gb|CD651762.1|CD651762
genomic: CTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGTGCAAAAGTTCTGgtatgttgtt ... gctttgtcagATTCCTGGTGAACCGAACATATCTTACATATGCTCTCGTTACTATCGTGCC
EST: CTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGTGCAAAAGTTCTG ATTCCTGGTGAACCGAACATATCTTACATATGCTCTCGTTACTATCGTGCCEST: gi|20508268|gb|BQ279947.1|BQ279947
genomic: CTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGTGCAAAAGTTCTGgtatgttgtt ... gctttgtcagATTCCTGGTGAACCGAACATATCTTACATATGCTCTCGTTACTATCGTGCC
EST: GACTTTGGTAGTGCAAAAGTTCTG ATTCCTGGTGAACCGAACATATCTTACATATGCTCTCGTTACTATCGTGCCEST: gi|148969547|gb|EE020375.2|EE020375
genomic: GACTTTGGTAGTGCAAAAGTTCTGgtatgttgtt ... gctttgtcagATTCCTGGTGAACCGAACATATCTTACATATGCTCTCGTTACTATCGTGCC
EST: CTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGTGCAAAAGTTCTG ATTCCTGGTGAACCGAACATATCTTACATATGCTCTCGTTACTATCGTGCCEST: gi|149103190|gb|EE288562.2|EE288562
genomic: CTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGTGCAAAAGTTCTGgtatgttgtt ... gctttgtcagATTCCTGGTGAACCGAACATATCTTACATATGCTCTCGTTACTATCGTGCC
EST: CTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGTGCAAAAGTTCTG ATTCCTGGTGAACCGAACATATCTTACATATGCTCTCGTTACTATCGTGCCEST: gi|31910837|gb|CD651623.1|CD651623
genomic: CTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGTGCAAAAGTTCTGgtatgttgtt ... gctttgtcagATTCCTGGTGAACCGAACATATCTTACATATGCTCTCGTTACTATCGTGCC
EST: CTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGTGCAAAAGTTCTG ATTCCTGGTGAACCGAACATATCTTACATATGCTCTC
genomic: CTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGTGCAAAAGTTCTGgtatgttgtt ... gctttgtcagATTCCTGGTGAACCGAACATATCTTACATATGCTCTC
tataccgtaaatctttgatccacatgttaatcagttccttatgctgctttgtcagATTCCTGGTGAACCGAACATATCTTACATATGCTCTCGTTACTATCGTGCCCCTGAGCTCATATTTGGTGCGACGGAGTATACAAGTTCAATAGACATAT
tgttaat putative branch site (score: 3)
ctgcttt putative PPT
taaatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttgactgtaattcatgtgttataataattggactctttacttgtataccgtaaatctttgatccacatgttaatcagttccttatgctgctttgtcagATTCCTGGTGAACCGAACATATCTTACATATGCTCTCGTTACTATCGTGCCCCTGAGCTCATATTTGGTGCGACGGAGTATACAAGTTCAATAGACATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA