Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatataattatatatatacgtacaacgatgatagtgagaaaaataacacgatcgaattaatccctagctaataaagaccaataatcgccatgcatcatatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAGCTGATCGGCGTGCACGAGACGGGGAGCGTGGCCCTGCGCGCCGCCGCGC

Basic information

species Zea mays
transcript GRMZM2G045057_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv03s0038g02140.t01 (Vitis vinifera), 3'ss of exon 6
------------------------------gtatataattat-atatatacgtacaacgatgatagtgagaaaaataacacga----tcgaattaatccctagctaataaagaccaataatcgccatgcatcatatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAGCTGATCGGCGTGCACGAGACGGGGAGCGTGGCCCTGCGCGCCGCCGCGC
                               |||  ||     |||| | | |  | | ||  || | | |  |||||   ||    |||| ||     |  |     ||    ||   | |    ||     |   ||||||||||||| || || ||||| ||||| || || |||||||||||||||||   ||| ||  ||||||||     ||||                      
gtgctgatgctcatccaccaggcaaccaccctatcaaacccccatattttctttgatcaatt-taattaaattaataatcagagttttcgagttgtattcctgtgcggaatagtca--cagCATGTTGTGGTGTTGCTGCAGTTCATCACCTTTGGATTCGCATGCACACCTCTGTACTTCGTGTGGGAGAAAGCGATAGGGATGCACGAGTGCAAGAGCC---------------------

upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 6
lower sequence: PP1S90_46V6.1 (Physcomitrella patens), 3'ss of exon 6
gtatataattatatatatacgtacaacgatgatagtgagaaaaataacacgatcgaattaatccctagctaataaa--gaccaataatcgccatgc--atcatatgt-gcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAGCTGATCGGCGTGCACGAGACGGGGAGCGTGGCCCTGCGCGCCGCCGCGC
||||    || |||   | | ||  |   |||     ||  || |    | ||| |  |       | |  ||       | | |||||         ||  ||||| |||||| |||||  | || || ||    || |||||||||||||||||||||||| |||| ||| | ||| | |||  |||| |   |||  | || |   |||
gtatgctcttttattacttcctatcaatgtgaactgcagttaatttgtcccatcaatctctagaacaacatatgggctagctattaatcagtgaaataatggtatgttgcagTTTATCACTGTTGGCTTTGCTGTTACTCCACTCTACTTCGTGTGGGAGAAGATGATTGGCATCCACAATACGAAGAGCCTTCTCCTAAGAGCAGTGTCGC

upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 6
lower sequence: EFJ34222 (Selaginella moellendorffii), 3'ss of exon 6
---------------------------------------------------------------gtatataattatatatatacgtacaacgatgatagtgagaaaaataacacgatcgaattaatccctagctaataaagac-caataatcgccatgcatcatatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAGCTGATCGGCGTGCACGAGACGGGGAGCGTGGCCCTGCGCGCCGCCGCGC-
                                                                |   |  |  | |   |        |||  | |  || | |   ||      | | ||  |  ||  ||  | |   | | ||  |||| ||| |         |||||||||||||| || ||||| |||||||| || ||| |||||||||||||| |  | ||| | ||| ||||||  |   |  || |||| || || |  | 
gtcattctcatgctcatccatcaggcaagcttttttctttcctcgagctcttctttacttcttcttcttcttcttcttcttcttcttcccgagaagaaagaaagaggaaagtttgccaagtt--tttctttcttctgattcctcgattctcgcgatgga------aaacagTTCATCACGTTTGGATTCGCATGCACGCCGCTGTACATCGTGTGGGAGAAGATTCTGGGCATTCACAAGACGGCCAATCTCCCCGTGCGAGC-GCTGGCCA

upper sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 6
lower sequence: EFJ21839 (Selaginella moellendorffii), 3'ss of exon 6
-----------------------------------------------gtatataattatatatatacgtacaacgatgatagtgagaaaaataacacgatcgaattaatccctagctaataaagaccaataatcgccatgcatcatatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAGCTGATCGGCGTGCACGAGACGGGGAGCGTGGCCCTGCGCGCCGCCGCGC-
                                                | | || || |   | | | |    |   ||       || |  ||      | || |  | | |   |   |     | ||  |||| ||| |         |||||||||||||| || ||||| |||||||| || ||| |||||||||||||| |  | ||| | ||| ||||||  |   |  || |||| || || |  | 
gttctcatgctcatccatcaggcaagcttttttctttcctcgagctcttctttacttcttcttcttcttcttcccgagaagaaagaaagaggaaagtttgccaagtttttctttcttctgattcctcgattctcgcgatgga------aaacagTTCATCACGTTTGGATTCGCATGCACGCCGCTGTACATCGTGTGGGAGAAGATTCTGGGCATTCACAAGACGGCCAATCTCCCCGTGCGAGC-GCTGGCCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78112333|gb|DV530727.1|DV530727
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|71764011|gb|DR961948.1|DR961948
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|50328669|gb|CO523795.1|CO523795
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|78082524|gb|DV510936.1|DV510936
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|76288759|gb|DV028327.1|DV028327
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|91874194|gb|EB404151.1|EB404151
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|37424295|gb|CF649879.1|CF649879
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|71758159|gb|DR956096.1|DR956096
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|148950657|gb|EC896243.2|EC896243
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|78120350|gb|DV538734.1|DV538734
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|74238571|gb|DT646485.1|DT646485
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|74233955|gb|DT641869.1|DT641869
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|148934104|gb|EC878118.2|EC878118
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|37418346|gb|CF646841.1|CF646841
EST:     ACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: ACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|76926808|gb|DV171015.1|DV171015
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|149082574|gb|EE171769.2|EE171769
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|71767925|gb|DR965862.1|DR965862
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|78089315|gb|DV517689.1|DV517689
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|76917088|gb|DV166674.1|DV166674
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|76010505|gb|DT937675.1|DT937675
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|93283664|gb|EB675928.1|EB675928
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|78107103|gb|DV525521.1|DV525521
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|50327191|gb|CO522317.1|CO522317
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|91869460|gb|EB400396.1|EB400396
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|149205333|gb|ES700929.1|ES700929
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|76010835|gb|DT938005.1|DT938005
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|37419467|gb|CF647416.1|CF647416
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|71444735|gb|DR825785.1|DR825785
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|94474307|gb|EB703265.1|EB703265
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|88755223|gb|DY539364.1|DY539364
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|148959931|gb|EE153170.2|EE153170
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|88748025|gb|DY532166.1|DY532166
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|78088592|gb|DV516985.1|DV516985
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|78125247|gb|DV543631.1|DV543631
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|148966351|gb|EE017338.2|EE017338
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|149098688|gb|EE184698.2|EE184698
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|76922170|gb|DV168885.1|DV168885
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|78076145|gb|DV504579.1|DV504579
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|86472772|gb|DY239142.1|DY239142
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|149039683|gb|EE046669.2|EE046669
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|89250924|gb|DY622710.1|DY622710
EST:     AGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: AGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|76021210|gb|DT948380.1|DT948380
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|71758786|gb|DR956723.1|DR956723
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|76016574|gb|DT943744.1|DT943744
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|78086535|gb|DV514928.1|DV514928
EST:     CCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGGTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|86465793|gb|DY232166.1|DY232166
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|50330173|gb|CO525299.1|CO525299
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|76280995|gb|DV020563.1|DV020563
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|86470112|gb|DY236482.1|DY236482
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|37418954|gb|CF647150.1|CF647150
EST:     GCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: GCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|89252694|gb|DY624480.1|DY624480
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|76010802|gb|DT937972.1|DT937972
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|71301533|gb|DR786807.1|DR786807
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|71769396|gb|DR967333.1|DR967333
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|86470985|gb|DY237355.1|DY237355
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|91050270|gb|EB160688.1|EB160688
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
EST: gi|149095642|gb|EE181264.2|EE181264
EST:     CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAG                         TTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG
genomic: CGCGCTCCGGCTTCCGCGACGCCGCAGTCATCTTCATGCTCATCCACCAGgtatataatt ... atatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgaattaatccctagctaataaagaccaataatcgccatgcatcatatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAGCTGATCGGCGTGCACGAGACGGGGAGCGTGGCCCTGCGCGCCGCCGCGC
              agctaat  putative branch site (score: 3)
                 taataaaga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatataattatatatatacgtacaacgatgatagtgagaaaaataacacgatcgaattaatccctagctaataaagaccaataatcgccatgcatcatatgtgcagTTCATCACGTTCGGGTTCGCGTGCACGCCACTCTACTTCGTGTGGGAGAAGCTGATCGGCGTGCACGAGACGGGGAGCGTGGCCCTGCGCGCCGCCGCGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT