1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaatttgcatttcatatcagagcctttagttatgctgcttacttgcttacatgcatttgttgcttactcaatatgtttttccaattactacagAGCAGTGAAAAAGAAATTGAAGGAACGGATGGATGATTTTCAG
species | Zea mays |
transcript | GRMZM2G044527_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGATGTGGAAAGGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGG AGCAGTGAAAAAGAAATTGAAGGAACGGATGGATGATTTTCAGEST: gi|101400235|gb|EB821938.1|EB821938
genomic: GGATGTGGAAAGGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGGgtaaatttgc ... attactacagAGCAGTGAAAAAGAAATTGAAGGAACGGATGGATGATTTTCAG
EST: GGATGTGGAAAGGGTTCTGCCGTGGCCCGATCAAGAGAGCAAACTACTGG AGCAGTGAAAAAGAAATTGAAGGAACGGATGGATGATTTTCAGEST: gi|148932260|gb|EC875796.2|EC875796
genomic: GGATGTGGAAAGGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGGgtaaatttgc ... attactacagAGCAGTGAAAAAGAAATTGAAGGAACGGATGGATGATTTTCAG
EST: GGATGTGGAAAGGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGG AGCAGTGAAAAAGAAATTGAAGGAACGGATGGATGATTTTCAG
genomic: GGATGTGGAAAGGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGGgtaaatttgc ... attactacagAGCAGTGAAAAAGAAATTGAAGGAACGGATGGATGATTTTCAG
ttacttgcttacatgcatttgttgcttactcaatatgtttttccaattactacagAGCAGTGAAAAAGAAATTGAAGGAACGGATGGATGATTTTCAG
tgcttac putative branch site (score: 2)
aatatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttgcatttcatatcagagcctttagttatgctgcttacttgcttacatgcatttgttgcttactcaatatgtttttccaattactacagAGCAGTGAAAAAGAAATTGAAGGAACGGATGGATGATTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA