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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatcttgacccaggtccattattttgtagtactgttatggattttatgttcatatagtaggcgtagaaaccaataatcaatttatgctataaatctgaagGTGGATGGTGATACTAGTACCAATGACTGTGTTATTGCTATGGCAAGTGGGTTGTCTGGTTTATCTGGAATTCAAAGTCTTGATAGCATTGAGGCTCAAC

Basic information

species Zea mays
transcript GRMZM2G044237_T04
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044237_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os03g17120.1 (Oryza sativa), 3'ss of exon 10
gatcttgacccaggtccattattttg-tagtactgttatggattttatgttcatatagtaggcgtagaaaccaataatcaatttatgctataaatctgaagGTGGATGGTGATACTAGTACCAATGACTGTGTTATTGCTATGGCAAGTGGGTTGTCTGGTTTATCTGGAATTCAAAGTCTTGATAGCATTGAGGCTCAAC
 |      ||   ||| | || |||| ||    ||||||||   || || || |  |    |     ||||   |      |||| |  |||| |||  |||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |||||||||||  | || |  | || |||||||| ||| |||||||
taatgcatcctctgtctactaatttggtatggttgttatggcaatt-tgatcctgaaactagtaggcaaacatcttgattgtttacgtcataattctttagGTGGATGGTGATACGAGTACCAATGACTGTGTTATTGCTCTGGCTAGTGGGTTATCTGGTTTATCCAGTATCCTTACTCATGATAGCACTGAAGCTCAAC

upper sequence: GRMZM2G044237_T01 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA13G19450.2 (Glycine max), 3'ss of exon 11
gatcttgacccaggtccattattttgtagtactgttatggattttatgttcatatagtaggcgtagaaaccaataatcaatttatgctataaat--ctgaagGTGGATGGTGATACTAGTACCAATGACTGTGTTATTGCTATGGCAAGTGGGTTGTCTGGTTTATCTGGAATTCAAAGTCTTGATAGCATTGAGGCTCAAC
      ||       ||| | |  ||| || |  |   | |  || ||  |  |   |  |  | | ||   ||    |  || |||  ||  |  ||  |||| ||||| ||||||||||| |||||   |||||||||  |||| ||||||||||||||  |   | | ||      ||| || ||   |||||||   |
-caaaagattattagccaatttaatgtggtgccatc-cgaagcttttgcccccaatttttggattgtaattgattcctatgttttgcattattttgctacagGTAGATGGAGATACTAGTACTAATGATACTGTTATTGCCTTGGCTAGTGGGTTGTCTGGGCTTGGTTGCATATCTTCTCTAGACAGTGATGAGGCTATTC

upper sequence: GRMZM2G044237_T01 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA10G05090.1 (Glycine max), 3'ss of exon 10
gatcttgacccaggtccattatttt--gtagtactgtt-atggattttatgttcatatagtaggcgtagaaaccaataatcaatttatgc-tataaatctgaagGTGGATGGTGATACTAGTACCAATGACTGTGTTATTGCTATGGCAAGTGGGTTGTCTGGTTTATCTGGAATTCAAAGTCTTGATAGCATTGAGGCTCAAC
    || |    | ||  || |     || || |  |  |  ||||||     ||  |  | |   | | ||   ||    |  || ||| |||    ||  |||| ||||| ||||||||||| |||||   |||||||||| |||| ||||||||||||||  ||    | ||      ||| || ||   |||||||   |
--atttaatgtggttctcttgtgcaaggtggtgccatccaaagattttgcccccaatttttgg--attgtaattgattcctatgttttgcatattttgctacagGTAGATGGAGATACTAGTACTAATGATACTGTTATTGCTTTGGCTAGTGGGTTGTCTGGGCTAGGCTGCATATCTTCTCTAGACAGTGATGAGGCTATTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76917242|gb|DV166726.1|DV166726
EST:     GGAGAGAAATGATCCGGATGTCAGTGAGTAGAAGTTTCAACCAAATTACA                         GTGGATGGTGATACTAGTACCAATGACTGTGTTATTGCTATGGCAAGTGGG
genomic: GGAGAGAAATGATCCGGATGTCAGTGAGTAGAAGTTTCAACCAAATTACAgtgagtctct ... aaatctgaagGTGGATGGTGATACTAGTACCAATGACTGTGTTATTGCTATGGCAAGTGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttcatatagtaggcgtagaaaccaataatcaatttatgctataaatctgaagGTGGATGGTGATACTAGTACCAATGACTGTGTTATTGCTATGGCAAGTGGGTTGTCTGGTTTATCTGGAATTCAAAGTCTTGATAGCATTGAGGCTCAAC
                          aataatcaatttatgc  TA-rich tract