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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtacgcaatgatacagccaatatgactgggattcttgtttcacattggtctgctgatgctaatatgatatagtagagtgcctttctgatatacaggctttggcattgtagGAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCAGTTCAGGG

Basic information

species Zea mays
transcript GRMZM2G044237_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044237_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g17120.2 (Oryza sativa), 3'ss of exon 6
gtaggtac-gcaatgatacagccaa--tatgactgggattcttgtttcacattggtctgctgatgctaatatgatatagtagagtgcctttctgatatacaggctttggcattgtagGAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCAGTTCAGGG
    |||| |   ||  ||| ||||  ||||  || | |   |||   | | | ||  ||| |  ||| ||  || |  |           ||||      || |||| || || ||||||||||| |||||||||| | |||||||||||||||||||||||| ||  || ||||
----gtacagtgctgccacaaccaaactatggttgag-tgactgtactaaactagtaggctaac-ctagtacaatttcat-----------ctgacgcttgggttttgacaatgcagGAGGCACTTGTAAATTCACTTCATAGACTTGTGGGCTCACTGTCTTCATCCATTGAGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71298836|gb|DR785405.1|DR785405
EST:     ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAG                         GAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
genomic: ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAGgtaggtacgc ... ggcattgtagGAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
EST: gi|149095151|gb|EE180766.2|EE180766
EST:     ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAG                         GAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
genomic: ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAGgtaggtacgc ... ggcattgtagGAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
EST: gi|148956344|gb|EC902151.2|EC902151
EST:     ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAG                         GAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
genomic: ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAGgtaggtacgc ... ggcattgtagGAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
EST: gi|148938791|gb|EC883128.2|EC883128
EST:     ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAG                         GAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
genomic: ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAGgtaggtacgc ... ggcattgtagGAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
EST: gi|78092275|gb|DV520649.1|DV520649
EST:     ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAG                         GAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
genomic: ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAGgtaggtacgc ... ggcattgtagGAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
EST: gi|149009106|gb|EE041258.2|EE041258
EST:     ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAG                         GAGGCACTTTTAAATTCACTACCTACACTTGTGGGCTCACTGTCTTCTTCA
genomic: ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAGgtaggtacgc ... ggcattgtagGAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
EST: gi|148932140|gb|EC875563.2|EC875563
EST:     ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAG                         GAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
genomic: ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAGgtaggtacgc ... ggcattgtagGAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
EST: gi|149071265|gb|EE159660.2|EE159660
EST:     ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAG                         GAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTT
genomic: ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAGgtaggtacgc ... ggcattgtagGAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTT
EST: gi|71446471|gb|DR827521.1|DR827521
EST:     ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAG                         GAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
genomic: ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAGgtaggtacgc ... ggcattgtagGAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
EST: gi|74242073|gb|DT649987.1|DT649987
EST:     ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAA                         GAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTC
genomic: ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAGgtaggtacgc ... ggcattgtagGAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTC
EST: gi|148972816|gb|EE023801.2|EE023801
EST:     ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAG                         GAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
genomic: ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAGgtaggtacgc ... ggcattgtagGAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
EST: gi|149110343|gb|EE190365.2|EE190365
EST:     ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAG                         GAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
genomic: ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAGgtaggtacgc ... ggcattgtagGAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
EST: gi|60348874|gb|DN215847.1|DN215847
EST:     ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAG                         GAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA
genomic: ATAACATACTGATTCAGTCTACTGGTGTCATTGGTCAAAGGATAAAGAAGgtaggtacgc ... ggcattgtagGAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgctaatatgatatagtagagtgcctttctgatatacaggctttggcattgtagGAGGCACTTTTAAATTCACTACCTAGACTTGTGGGCTCACTGTCTTCTTCAGTTCAGGG
     aatatgatatagta  TA-rich tract