Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagttcattcacccattttagttttttgtatcttgagcttggccatttgttcaagatgttctgtggaagccataaaagaatcagatgagaaaccaaatcatggtcaatgcactgaagttttcatttattttcagGAAGTAGCTGTAAAAAAATTCTTGGATCAAGATTTTTATGGCGATGCTCTGGATGAGTTTAGGAGTGAA

Basic information

species Zea mays
transcript GRMZM2G044180_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044180_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g06410.1 (Oryza sativa), 3'ss of exon 5
gtaagtagttcattcacccattttagttttttgtatcttgagcttggccatttgttcaagatgttctgtggaagccataaaagaatcagatgagaaaccaaatcatggtcaatgcactgaagttttcatttattttcagGAAGTAGCTGTAAAAAAATTCTTGGATCAAGATTTTTATGGCGATGCTCTGGATGAGTTTAGGAGTGAA
||||| |  |  ||  |   | ||    | ||||  | |         ||||  | | ||| |||      ||  | | |  |  |    |                |||||   ||     ||||  ||||||| |||||||||||||| || |||||||||||||||||||| ||||| |||||| ||||||| ||  ||||||||
gtaagaaact-gtttgcttttatttccatattgtgccataga----aacattcttcccagaggtt-----aaattctttattgttttgctt--------------ctgtcaaaaaac----atttttgtttatttgcagGAAGTAGCTGTCAAGAAATTCTTGGATCAAGATTTCTATGGTGATGCTTTGGATGAATTCCGGAGTGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211271921|gb|FL194746.1|FL194746
EST:     GTTCATATGGAGAGATTTACTGTGCTGACTGGAATGGAACC                         GAAGTAGCTGTNNNNNNNTTCTTGGATCAAGATTTTTATGGCGATGCTCTG
genomic: GTTCATATGGAGAGATTTACTGTGCTGACTGGAATGGAACCgtaagtagtt ... ttattttcagGAAGTAGCTGTAAAAAAATTCTTGGATCAAGATTTTTATGGCGATGCTCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcagatgagaaaccaaatcatggtcaatgcactgaagttttcatttattttcagGAAGTAGCTGTAAAAAAATTCTTGGATCAAGATTTTTATGGCGATGCTCTGGATGAGTTTAGGAGTGAA
                                      ttttcatttattttc  CT-rich tract
                                   aagttttcatttattt  TA-rich tract