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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtgttcatcatgctattgattcttccaccgcctcatgtgaaaaactcagttacagaatttattttgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG

Basic information

species Zea mays
transcript GRMZM2G044027_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044027_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 6
gtcagtgttcatc--atgct-attgattcttccaccgc--ctcatgtgaaaaactcagttacagaa----tttattttgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG
||  |||||  |   ||||| ||| | |  |||   ||  || ||| |||  |   | | |  | |    ||||| ||| | ||||||||||||||||| || || ||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
gttggtgtttttttaatgctgattaacttgtcctatgcaacttatgagaactatataatgaagggaggtttttatgttgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG

upper sequence: GRMZM2G044027_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA11G15020.1 (Glycine max), 3'ss of exon 6
------------------------------gtcagtgttcatcatgctattgattcttccaccgcctcatgtgaaaaactcagttacagaatttattttgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG
                               ||||  |  ||||| |  ||| |  ||   |    || | | |  |    |||   ||   ||||||| | | ||||||||||  | |||||||||||||| || ||||| ||||| |||| |||||| ||| | || | ||| ||||||||||| ||||| ||||
gttggaaaattgtctttggaaaatgataatttcagcttctatcat-catttggtctttattctttttctttttagtag---agtcttagttcttatttt-attggcagGATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAGGCTATTGGGGCAATGTGAACCCTATTG

upper sequence: GRMZM2G044027_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA12G06990.1 (Glycine max), 3'ss of exon 6
------------------------------gtcagtgttcatcatgctattgattcttccaccgcctcatgtgaaaaactcagttacagaatttattttgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG
                               ||||  |  ||||| |  ||| |  ||   |    || | |       | |||   ||   ||||||| | | ||||||||||  | |||||||||||||| || ||||| ||||| |||| |||||| ||| | ||   ||| ||||||||||| ||||| ||||
gttggtaaattgtctttggaaaatgataatttcagcttctatcat-cagttggtctttattctttttcttcttg-----ttagtcttagttcttatttt-attggcagGATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGCTATTGGGGCAATGTGAACCCTATTG

upper sequence: GRMZM2G044027_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 3'ss of exon 6
-gtcagtgttcatcatgctattgattcttccaccgcctcatgtgaaaaactcagttacagaatttattttgaatt---gcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG
  |  |  ||   | |  | ||  | |||  |||        | ||   |||| ||    || |||| || |  |    |||||| ||| | |||||||| || ||||| ||||| ||||| ||||||||||| ||||| |||  ||| ||||| |||||||||||||| |
gtttgggatttgacttcattttattcctttaaccaggat-cataaatttctcaatttattaaattatgttaatgtttaacagGATATTGCTTACATCAACTTCAGAAGTATATGGAGATCCTCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAG

upper sequence: GRMZM2G044027_T02 (Zea mays), 3'ss of exon 6
lower sequence: PP1S189_118V6.1 (Physcomitrella patens), 3'ss of exon 6
------------------------gtcagtgttcatcatgctattgattcttccaccgcctcatgtgaaaaactcagttacagaatttattttgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG
                          | |||       |  || | | | |        |||   |   |   | |      |  ||  |||      |||||||| |  | || || || |||||||||||||| |||||  | ||||||||||| || ||||  |||||||| || || ||||||||||
ccacttaatcggtttggaccgagaagctgtgacatctctagtaataagtatctatgtagctctcatccgatgattaaccttgg--ttgctttatggaggcagGATTCTTCTCACGTCTACCTCTGAAGTTTATGGAGATCCTTTGGAGCATCCTCAGACAGAGGAATACTGGGGAAACGTAAACCCAATTG

upper sequence: GRMZM2G044027_T02 (Zea mays), 3'ss of exon 6
lower sequence: EFJ17446 (Selaginella moellendorffii), 3'ss of exon 5
gtcagtgttcatcatgctattgattcttccaccgcctcatgtgaaaaactcagttacagaatttattttgaat-tgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG
                   || || || |   |   |||   ||  ||   |  ||       |  |   |   | ||||||| |  | || ||||| || ||||||||||| ||||| || |||||||| ||||  ||||  |||||||||||||| || || || |
------------------gttaat-ctcctctcttgtcacaagagcaagcaaactaactcgcattctcaaaccatacagGATTCTACTCACGTCAACCTCCGAAGTTTATGGGGATCCACTGGAGCATCCACAAAAGGAGGAATACTGGGGCAATGTGAATCCCATAG

upper sequence: GRMZM2G044027_T02 (Zea mays), 3'ss of exon 6
lower sequence: EFJ35029 (Selaginella moellendorffii), 3'ss of exon 5
gtcagtgttcatcatgctattgattcttccaccgcctcatgtgaaaaactcagttacagaatttattttgaat-tgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG
                   || || || |   |   |||   ||  ||   |  ||       |  |   |   | |||||||||  | || ||||| || ||||||||||| ||||| || |||||||| ||||  ||||  |||||||||||||| || || || |
------------------gttaat-ctcctctcttgtcacaagagcaagcaaactaactcgcattctcaaaccatacagGATTTTACTCACGTCAACCTCCGAAGTTTATGGGGATCCACTGGAGCATCCACAAAAGGAGGAATACTGGGGCAATGTGAATCCCATAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211425107|gb|FK999878.1|FK999878
EST:     GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGA
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGA
EST: gi|149089880|gb|EE179165.2|EE179165
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|148944203|gb|EC889294.2|EC889294
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|32841175|gb|CD980856.1|CD980856
EST:     ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|14206834|gb|BG840512.1|BG840512
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|148961007|gb|EE011707.2|EE011707
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|22473192|gb|BU037672.1|BU037672
EST:     GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCACTCGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|32909997|gb|CF014809.1|CF014809
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|6194647|gb|AW146751.1|AW146751
EST:     GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGNGATCCACTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|32841101|gb|CD980782.1|CD980782
EST:     ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|211032180|gb|FL277400.1|FL277400
EST:     GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCACTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|148970766|gb|EE021510.2|EE021510
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|32850262|gb|CD989943.1|CD989943
EST:     TACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: TACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|6020952|gb|AW065880.1|AW065880
EST:     GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCACTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|67016223|gb|CO444972.1|CO444972
EST:     GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCACTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|32850632|gb|CD990313.1|CD990313
EST:     ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|21987903|gb|BQ779431.1|BQ779431
EST:     GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCACTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|148930565|gb|EE285203.2|EE285203
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|26558105|gb|CA830340.1|CA830340
EST:     GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGT
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGT
EST: gi|32850126|gb|CD989807.1|CD989807
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|32850554|gb|CD990235.1|CD990235
EST:     ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|71442898|gb|DR823948.1|DR823948
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|211425100|gb|FK999871.1|FK999871
EST:     TTATTGGTACCCCTGA-CATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGGGATCCACTTGAGCATCC
genomic: TTATTGGTACCC-TGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|149107237|gb|EE189120.2|EE189120
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|211425097|gb|FK999868.1|FK999868
EST:     GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGG
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGG
EST: gi|149081449|gb|EE170575.2|EE170575
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|213173372|gb|FM186537.1|FM186537
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|211427693|gb|FK999880.1|FK999880
EST:     GTTATTGGTACCCTCAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACAT
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACAT
EST: gi|40337515|gb|CK371585.1|CK371585
EST:     GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|148951041|gb|EC896695.2|EC896695
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|149066780|gb|EE286922.2|EE286922
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|32850616|gb|CD990297.1|CD990297
EST:     ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|148960534|gb|EE011139.2|EE011139
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|32840343|gb|CD980024.1|CD980024
EST:     ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|149089846|gb|EE179125.2|EE179125
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|32840626|gb|CD980307.1|CD980307
EST:     ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|149097834|gb|EE183762.2|EE183762
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|211425101|gb|FK999872.1|FK999872
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|32849033|gb|CD988714.1|CD988714
EST:     ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATTCGCTTGAGCATCC
genomic: ACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|149097829|gb|EE183756.2|EE183756
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|67013235|gb|CO441984.1|CO441984
EST:     GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCACTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|148945878|gb|EC891170.2|EC891170
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|148956701|gb|EC902571.2|EC902571
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|211427695|gb|FK999882.1|FK999882
EST:     GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCACTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|32165003|gb|CD670321.1|CD670321
EST:     GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
EST: gi|6637013|gb|AW261285.1|AW261285
EST:     GTTATTGGTACCCTGAACATGCTGGGACTTGCAAAGAGAGTTGGAGCTAG                         GATTTTGNTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC
genomic: GTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 406

ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 890

ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 956

ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1611

ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttc ... tgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttccaccgcctcatgtgaaaaactcagttacagaatttattttgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG
                                      tttatttt  CT-rich tract
                              ttacagaatttatttt  TA-rich tract