Sequence
atgc intronic sequence ATGC exonic sequence...catttacgtctttcccttacccttattggcacaccaatacaattttgttgtcatgaggctatctagcctcattgttttcttaaacgatttcaatttgcagGCAAATACACATATAAATGTTCATCAAGACCTAAAAGATGTGAAGCTATGGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G043509_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os10g27230.1 (Oryza sativa), 3'ss of exon 7
catttacgtctttcccttacccttattggcac--accaatacaattttgttgtcatgaggctatctagcctcattgttttcttaaacgatttcaatttgcagGCAAATACACATATAAATGTTCATCAAGACCTAAAAGATGTGAAGCTATGGGAG
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--tatacaattcttcataccgataaacagtcttgacttgatgcattatggcgtcatgggggtcgcaggtctcatcactttttcaactgttctcactctgcagGCAAATACACACGTAAATGTCCATCAAGACCTCAAAGATGTGAAGCTGTGGGAG
upper sequence: GRMZM2G043509_T01 (Zea mays), 3'ss of exon 6
lower sequence: AT3G58580.1 (Arabidopsis thaliana), 3'ss of exon 6
--------catttacgtctttcccttaccct------tattggcacaccaatacaattttgttgtcatgaggctatctagcctcattgttttcttaaacgatttcaatttgcagGCAAATACACATATAAATGTTCATCAAGACCTAAAAGATGTGAAGCTATGGGAG
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gtactggttctttttttttttccattctcatgagaactgttagtttctgtatatgctcttttagtga--aagccaatgaattttcttattttgttgtggcaacttgttt---agGCAAACACACATGTAAATGTTCAACAAGATCTGAAGGATGTGAAGCTCTGGCAG
upper sequence: GRMZM2G043509_T01 (Zea mays), 3'ss of exon 6
lower sequence: Vv08s0007g07020.t01 (Vitis vinifera), 3'ss of exon 6
-----catttacgtctttcccttacccttattggcacaccaatacaattttgttgtcatgaggctatctagcctcattgttttcttaaacgatttcaatttgcagGCAAATACACATATAAATGTTCATCAAGACCTAAAAGATGTGAAGCTATGGGAG
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gtggatgggcatctctgcttctctcctttcttcctttgcctctgcaaacat----tcttgaaagcatcttgtaaccatttgttttctgatgtgctggagtt-cagGCAAATACACACATAAATGTTCATCAAGAATTGAAAGATGTCAAGTTGTGGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttgtcatgaggctatctagcctcattgttttcttaaacgatttcaatttgcagGCAAATACACATATAAATGTTCATCAAGACCTAAAAGATGTGAAGCTATGGGAG
attgttttcttaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catttacgtctttcccttacccttattggcacaccaatacaattttgttgtcatgaggctatctagcctcattgttttcttaaacgatttcaatttgcagGCAAATACACATATAAATGTTCATCAAGACCTAAAAGATGTGAAGCTATGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - -cacacca
- - - - - - - - - - - - - - - - - - - - - -tttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgaggct