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gtgatgttgtctccttactgctttaaaactttctgctcaggaaacctatttttgggaatatataactctgtttgaaattcactatgtgctgattgatcatcatcttgcagGATGACAAGGATGAGTATAGTGAAAATAGAAGATCTGATGGAAATTGGGGTGGTTCGAGAAGTCCGCCAAATGGAAGTTACTCTGATCGTCAGAATTATA
species | Zea mays |
transcript | GRMZM2G043056_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACGGAGATACACAGGAGAAAGAAGTACTGATAGGCCACCAAGGGCAAAG GATGACAAGGATGAGTATAGTGAAAATAGAAGATCTGATGGAAATTGGGGTEST: gi|78087088|gb|DV515481.1|DV515481
genomic: AACGTAGATACACAGGAGAAAGGAGTACTGATAGGCCACCAAGGGCAAAGgtgatgttgt ... catcttgcagGATGACAAGGATGAGTATAGTGAAAATAGAAGATCTGATGGAAATTGGGGT
EST: AACGTAGATACACAGGAGAAAGGAGTACTGATAGGCCACCAAGGGCAAAG GATGACAAGGATGAGTATAGTGAAAATAGAAGATCTGATGGAAATTGGGGTEST: gi|71428282|gb|DR809332.1|DR809332
genomic: AACGTAGATACACAGGAGAAAGGAGTACTGATAGGCCACCAAGGGCAAAGgtgatgttgt ... catcttgcagGATGACAAGGATGAGTATAGTGAAAATAGAAGATCTGATGGAAATTGGGGT
EST: AACGTAGATACACAGGAGAAAGGAGTACTGATAGGCCACCAAGGGCAAAG GATGACAAGGATGAGTATAGTGAAAATAGAAGATCTGATGGAAATTGGGGTEST: gi|32943226|gb|CF048045.1|CF048045
genomic: AACGTAGATACACAGGAGAAAGGAGTACTGATAGGCCACCAAGGGCAAAGgtgatgttgt ... catcttgcagGATGACAAGGATGAGTATAGTGAAAATAGAAGATCTGATGGAAATTGGGGT
EST: AACGGAGATACACAGGAGAAAGAAGTACTGATAGGCCACCAAGGGCAAAG GATGACAAGGATGAGTATAGTGAAAATAGAAGATCTGATGGAAATTGGGGTEST: gi|78115033|gb|DV533421.1|DV533421
genomic: AACGTAGATACACAGGAGAAAGGAGTACTGATAGGCCACCAAGGGCAAAGgtgatgttgt ... catcttgcagGATGACAAGGATGAGTATAGTGAAAATAGAAGATCTGATGGAAATTGGGGT
EST: AACGTAGATACACAGGAGAAAGGAGTACTGATAGGCCACCAAGGGCAAAG GATGACAAGGATGAGTATAGTGAAAATAGAAGATCTGATGGAAATTGGGGT
genomic: AACGTAGATACACAGGAGAAAGGAGTACTGATAGGCCACCAAGGGCAAAGgtgatgttgt ... catcttgcagGATGACAAGGATGAGTATAGTGAAAATAGAAGATCTGATGGAAATTGGGGT
gaatatataactctgtttgaaattcactatgtgctgattgatcatcatcttgcagGATGACAAGGATGAGTATAGTGAAAATAGAAGATCTGATGGAAATTGGGGTGGTTCGAGAAGTCCGCCAAATGGAAGTTACTCTGATCGTCAGAATTATA
tcatctt CT-rich tract
tttgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatgttgtctccttactgctttaaaactttctgctcaggaaacctatttttgggaatatataactctgtttgaaattcactatgtgctgattgatcatcatcttgcagGATGACAAGGATGAGTATAGTGAAAATAGAAGATCTGATGGAAATTGGGGTGGTTCGAGAAGTCCGCCAAATGGAAGTTACTCTGATCGTCAGAATTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG