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...gtgcccaaatgaaagaaaaacaacccaccatacagtacttgttcagatgaaaatgaggaatgaactacatgactgatcaatttcttttcgtcttccttagGCTCGTTTGGATGAATATTTATATGAGGATGCTCCGTTTGATATATGTAGCTGTCAG
species | Zea mays |
transcript | GRMZM2G042398_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGAAAAGGTTCAGTTTCCCTGCACGGCTTATTTGTACTGATTGCTATGAG GCTCGTTTGGATGAATATTTATATGAGGATGCTCCGTTTGATATATGTAGCEST: gi|166452866|gb|EG077524.1|EG077524
genomic: GGAAAAGGTTCAGTTTCCCTGCACGGCTTATTTGTACTGATTGCTATGAGgtagagatga ... tcttccttagGCTCGTTTGGATGAATATTTATATGAGGATGCTCCGTTTGATATATGTAGC
EST: GGAAAAGGTTCAGTTTCCCTGCACGGCTCATTTGTACTGATTGCTATGAG GCTCGTTTGGATGAATATTTATATGAGGATGCTCCGTTTGA-ATAT
genomic: GGAAAAGGTTCAGTTTCCCTGCACGGCTTATTTGTACTGATTGCTATGAGgtagagatga ... tcttccttagGCTCGTTTGGATGAATATTTATATGAGGATGCTCCGTTTGATATAT
gatgaaaatgaggaatgaactacatgactgatcaatttcttttcgtcttccttagGCTCGTTTGGATGAATATTTATATGAGGATGCTCCGTTTGATATATGTAGCTGTCAG
gactgat putative branch site (score: 3)
tcaatttcttttcgtc CT-rich tract
aatttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcccaaatgaaagaaaaacaacccaccatacagtacttgttcagatgaaaatgaggaatgaactacatgactgatcaatttcttttcgtcttccttagGCTCGTTTGGATGAATATTTATATGAGGATGCTCCGTTTGATATATGTAGCTGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - aagaaaa
- - - - - - - - - - - - ccaccat
- - - - - - - - - - - - - - - - - gtacttg
- - - - - - - - - - - - - - - - - - - - - - -gatgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctacatg