1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttgctgagatttactggcaatctgttcgctcgcattttgcacttctcctttatgatgcgcacattgaatgttgttgagcagtggcaaccattttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCTATAGAAGTAGCTGAGAGGCGAATCGCTACTGACAAATGGCCGGAGTACT
species | Zea mays |
transcript | GRMZM2G040843_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAG CTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCTEST: gi|13198364|gb|BG354284.1|BG354284
genomic: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAGgtttgcattc ... ttttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCT
EST: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAG CTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCTEST: gi|32803878|gb|CD956114.1|CD956114
genomic: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAGgtttgcattc ... ttttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCT
EST: GATCCTGGCCAACATTACTGTGGCAG CTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCTEST: gi|32803744|gb|CD955980.1|CD955980
genomic: GATCCTGGCCAACATTACTGTGGCAGgtttgcattc ... ttttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCT
EST: GATCCGGGCCAACATTACTGTGGCAG CTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCTEST: gi|78073753|gb|DV502187.1|DV502187
genomic: GATCCTGGCCAACATTACTGTGGCAGgtttgcattc ... ttttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCT
EST: GCCTTGGTCATACCCCAATGGAGGATCCTGGCCAACATTACTGTGGCAG CTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCTEST: gi|50327335|gb|CO522461.1|CO522461
genomic: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAGgtttgcattc ... ttttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCT
EST: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAG CTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCTEST: gi|67035329|gb|CO463862.1|CO463862
genomic: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAGgtttgcattc ... ttttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCT
EST: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAG CTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCTEST: gi|24934163|gb|CA452381.1|CA452381
genomic: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAGgtttgcattc ... ttttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCT
EST: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAG CTCACAAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCEST: gi|148999776|gb|EE036786.2|EE036786
genomic: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAGgtttgcattc ... ttttgtgcagCTCACA-GTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGC
EST: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAG CTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCTEST: gi|148956076|gb|EC901830.2|EC901830
genomic: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAGgtttgcattc ... ttttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCT
EST: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAG CTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCTEST: gi|211001916|gb|FL002816.1|FL002816
genomic: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAGgtttgcattc ... ttttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCT
EST: C-TTGGTCATACCACAATGGNAG-ATCCCTG-CCNACATTACTGTGGCAG CTCACAGTGCCATGCATCAAGATGAACAGACCAGAEST: gi|32803583|gb|CD955819.1|CD955819
genomic: CCTTGGTCATACCACAATGG-AGGATCC-TGGCCAACATTACTGTGGCAGgtttgcattc ... ttttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGA
EST: GATCCCGGCCAACATTACTGTGGCAG CTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCTEST: gi|149001133|gb|EE038394.2|EE038394
genomic: GATCCTGGCCAACATTACTGTGGCAGgtttgcattc ... ttttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCT
EST: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAG CTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCTEST: gi|91048610|gb|EB159028.1|EB159028
genomic: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAGgtttgcattc ... ttttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCT
EST: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAG CTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCT
genomic: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAGgtttgcattc ... ttttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCT
tcctttatgatgcgcacattgaatgttgttgagcagtggcaaccattttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCTATAGAAGTAGCTGAGAGGCGAATCGCTACTGACAAATGGCCGGAGTACT
ccatttt CT-rich tract
attgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctgagatttactggcaatctgttcgctcgcattttgcacttctcctttatgatgcgcacattgaatgttgttgagcagtggcaaccattttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCTATAGAAGTAGCTGAGAGGCGAATCGCTACTGACAAATGGCCGGAGTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
ttgctga
- - - - - -tactggc
- - - - - - - - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaacca