1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtagttacttctgttcttatctacatgtttagtaagacagcgtgctagtaggactcttttcgatttataattccacactcaattcctcctatgaatcagGTGAAGAAGATTGTTGAGGGTAGTTTTCAGTCGTTCCAATTGATGTACAGCCCCCTCTTGCAAGAGTATATTGCTGAAGGCCTATTGAAGACATCATCCC
species | Zea mays |
transcript | GRMZM2G040613_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TATCATATATGGGTGATTTGAGAATGCTGTTTGCGGAAGACAAAGATAAG GTGAAGAAGATTGTTGAGGGTAGTTTTCAGTCGTTCCAATTGATGTACAGCEST: gi|71325071|gb|DR799220.1|DR799220
genomic: TATCATATATGGGTGATTTGAGAATGCTGTTTGCGGAAGACAAAGATAAGgtatcaacaa ... tatgaatcagGTGAAGAAGATTGTTGAGGGTAGTTTTCAGTCGTTCCAATTGATGTACAGC
EST: TATCATATATGGGTGATTTGAGAATGCTGTTTGCGGAAGACAAAGATAAG GTGAAGAAGATTGTTGAGGGTAGTTTTCAGTCGTTCCAATTGATGTACAGCEST: gi|71325073|gb|DR799221.1|DR799221
genomic: TATCATATATGGGTGATTTGAGAATGCTGTTTGCGGAAGACAAAGATAAGgtatcaacaa ... tatgaatcagGTGAAGAAGATTGTTGAGGGTAGTTTTCAGTCGTTCCAATTGATGTACAGC
EST: TATCATATATGGGTGATTTGAGAATGCTGTTTGCGGAAGACAAAGATAAG GTGAAGAAGATTGTTGAGGGTAGTTTTCAGTCGTTCCAATTGATGTACAGCEST: gi|76293091|gb|DV032659.1|DV032659
genomic: TATCATATATGGGTGATTTGAGAATGCTGTTTGCGGAAGACAAAGATAAGgtatcaacaa ... tatgaatcagGTGAAGAAGATTGTTGAGGGTAGTTTTCAGTCGTTCCAATTGATGTACAGC
EST: TATCATATATGGGTGATTTGAGAATGCTGTTTGCGGAAGACAAAGATAAG GTGAAGAAGATTGTTGAGGGTAGTTTTCAGTCGTTCCAATTGATGTACAGCEST: gi|89759612|gb|DY688380.1|DY688380
genomic: TATCATATATGGGTGATTTGAGAATGCTGTTTGCGGAAGACAAAGATAAGgtatcaacaa ... tatgaatcagGTGAAGAAGATTGTTGAGGGTAGTTTTCAGTCGTTCCAATTGATGTACAGC
EST: TATCATATATGGGTGATTTGAGAATGCTGTTTGCGGAAGACAAAGATAAG GTGAAGAAGATTTGT-GAGGGTAGTTTTCAGT
genomic: TATCATATATGGGTGATTTGAGAATGCTGTTTGCGGAAGACAAAGATAAGgtatcaacaa ... tatgaatcagGTGAAGAAGATT-GTTGAGGGTAGTTTTCAGT
ctagtaggactcttttcgatttataattccacactcaattcctcctatgaatcagGTGAAGAAGATTGTTGAGGGTAGTTTTCAGTCGTTCCAATTGATGTACAGCCCCCTCTTGCAAGAGTATATTGCTGAAGGCCTATTGAAGACATCATCCC
ttcctcctat CT-rich tract
ttttcgatttataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagttacttctgttcttatctacatgtttagtaagacagcgtgctagtaggactcttttcgatttataattccacactcaattcctcctatgaatcagGTGAAGAAGATTGTTGAGGGTAGTTTTCAGTCGTTCCAATTGATGTACAGCCCCCTCTTGCAAGAGTATATTGCTGAAGGCCTATTGAAGACATCATCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - -acttctg
- - - - - - - - - - -ctacatg
- - - - - - - - - - - - - - - - - - - - gcgtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacact