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...tccattacctttcagtaaaagtaaatcgttttgactgtcctgtggcaaaattttcccaaaaataatcccatgattaatatagtgtgcaccttctgattagAGATGCTGAAGATCATATTGCTTGGCTTCTTCAACATGGTTGCCATGAAAAAGCATTGGCTGCAGTTGAGGCAGGGCAAGGACGCACTGAGCTTCTTGAT
species | Zea mays |
transcript | GRMZM2G040247_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCTTTGTATTACATTGTGTCTCCTAAGGACATAGTCGTTGCAAAGCCAAG AGATGCTGAAGATCATATTGCTTGGCTTCTTCAACATGGTTGCCATGAAAAEST: gi|211493350|gb|FL383684.1|FL383684
genomic: CCTTTGTATTACATTGTGTCTCCTAAGGACATAGTCGTTGCAAAGCCAAGgtttgttaca ... ttctgattagAGATGCTGAAGATCATATTGCTTGGCTTCTTCAACATGGTTGCCATGAAAA
EST: CTTTGTATTACATTGCGTCTCCTAAGGACATAGTATGTTGCAAAGCCGAG AGATGCTGAAGATC
genomic: CTTTGTATTACATTGTGTCTCCTAAGGACATAGTC-GTTGCAAAGCCAAGgtttgttaca ... ttctgattagAGATGCTGAAGATC
caaaattttcccaaaaataatcccatgattaatatagtgtgcaccttctgattagAGATGCTGAAGATCATATTGCTTGGCTTCTTCAACATGGTTGCCATGAAAAAGCATTGGCTGCAGTTGAGGCAGGGCAAGGACGCACTGAGCTTCTTGAT
gattaat putative branch site (score: 53)
caccttct putative PPT
atgattaatatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccattacctttcagtaaaagtaaatcgttttgactgtcctgtggcaaaattttcccaaaaataatcccatgattaatatagtgtgcaccttctgattagAGATGCTGAAGATCATATTGCTTGGCTTCTTCAACATGGTTGCCATGAAAAAGCATTGGCTGCAGTTGAGGCAGGGCAAGGACGCACTGAGCTTCTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - -aaagtaaa
- - - - - - - - - - - - - - - - - -tgtcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcacc