1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...caatcttgtgataaagagtttcttgcaatattgcattaatttagtatagaatggtgcaatacatcaatacatgttttcaccatattcagaaatattatagGAAGAGGCGCCTATTGAGGATATTGCAGAGGAAGATGAAGAAGCTGAGATTGGCATGTGGGAGGCAGTAACATGGCTTGCGGTTTTAACACTCTGGGTGT
species | Zea mays |
transcript | GRMZM2G040017_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATTTACAGTCCAATAGGCAGT GAAGAGGCGCCTATTGAGGATATTGCAGAGGAAGATGAAGAAGCTGAGATTEST: gi|60339318|gb|DN206291.1|DN206291
genomic: CATTTACAGTCCAATAGGCAGTgtaagtttga ... aatattatagGAAGAGGCGCCTATTGAGGATATTGCAGAGGAAGATGAAGAAGCTGAGATT
EST: TCTATTTCCAATTAAGTGGACGGAGCAACATTTACAGTCCAATAGGCAGT GAAGAGGCGCCTATTGAGGATATTGCAGAGGAAGATGAAGAAGCTGAGATTEST: gi|148972711|gb|EE023671.2|EE023671
genomic: TCTATTTCCAATTAAGTGGACGGAGCAACATTTACAGTCCAATAGGCAGTgtaagtttga ... aatattatagGAAGAGGCGCCTATTGAGGATATTGCAGAGGAAGATGAAGAAGCTGAGATT
EST: TCTATTTCCAATTAAGTGGACGGAGCAACATTTACAGTCCAATAGGCAGT GAAGAGGCGCCTATTGAGGATATTGCAGAGGAAGATGAAGAAGCTGAGATT
genomic: TCTATTTCCAATTAAGTGGACGGAGCAACATTTACAGTCCAATAGGCAGTgtaagtttga ... aatattatagGAAGAGGCGCCTATTGAGGATATTGCAGAGGAAGATGAAGAAGCTGAGATT
atagaatggtgcaatacatcaatacatgttttcaccatattcagaaatattatagGAAGAGGCGCCTATTGAGGATATTGCAGAGGAAGATGAAGAAGCTGAGATTGGCATGTGGGAGGCAGTAACATGGCTTGCGGTTTTAACACTCTGGGTGT
atattcagaaatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatcttgtgataaagagtttcttgcaatattgcattaatttagtatagaatggtgcaatacatcaatacatgttttcaccatattcagaaatattatagGAAGAGGCGCCTATTGAGGATATTGCAGAGGAAGATGAAGAAGCTGAGATTGGCATGTGGGAGGCAGTAACATGGCTTGCGGTTTTAACACTCTGGGTGT
- - - - -gataaaga
- - - - - - - - - -ttcttgc
- - - - - - - - - - - - - - - ttgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - -tggtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacatg