1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attgatggacggtggagtggtggacgatcatttacattttactatgatctgttggcattcttcctcatttgagcatgaactttgtctttacactctgcagAGCGATGCTGCAGATGCTCTATCAAGATTCTATTATCCACCGGTTGCTGCTGTAACTGTTTCGTATCCAAAGGAAGCAATTAGAAAAGAATGCTTAATTG
species | Zea mays |
transcript | GRMZM2G039396_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCATGACTATTCCATCATATGTTGCTAGCAACATTTTGCGTCCACTTTCA AGCGATGCTGCAGATGCTCTATCAAGATTCTATTATCCACCGGTTGCTGCTEST: gi|213183994|gb|FM183521.1|FM183521
genomic: TCATGACTATTCCATCATATGTTGCTAGCAACATTTTGCGTCCACTTTCAgtaagtacaa ... cactctgcagAGCGATGCTGCAGATGCTCTATCAAGATTCTATTATCCACCGGTTGCTGCT
EST: TCATGACTATTCCATCATATGTTGCTAGCAACATTTTACGTCCACTTTCA AGCGATGCTGCAGATGCTCTATCAAGATTCTATTATCCACCGGTTGCTGCTEST: gi|67014942|gb|CO443691.1|CO443691
genomic: TCATGACTATTCCATCATATGTTGCTAGCAACATTTTGCGTCCACTTTCAgtaagtacaa ... cactctgcagAGCGATGCTGCAGATGCTCTATCAAGATTCTATTATCCACCGGTTGCTGCT
EST: TCATGACTATTCCATCATATGTTGCTAGCAACATTTTACGTCCACTTTCA AGCGATGCTGCAGATGCTCTATCAAGATTCTATTATCCACCGGTTGCTGCTEST: gi|67020129|gb|CO448878.1|CO448878
genomic: TCATGACTATTCCATCATATGTTGCTAGCAACATTTTGCGTCCACTTTCAgtaagtacaa ... cactctgcagAGCGATGCTGCAGATGCTCTATCAAGATTCTATTATCCACCGGTTGCTGCT
EST: TCATGACTATTCCATCATATGTTGCTAGCAACATTTTACGTCCACTTTCA AGCGATGCTGCAGATGCTCTATCAAGATTCTATTATCCACCGGTTGCTGCT
genomic: TCATGACTATTCCATCATATGTTGCTAGCAACATTTTGCGTCCACTTTCAgtaagtacaa ... cactctgcagAGCGATGCTGCAGATGCTCTATCAAGATTCTATTATCCACCGGTTGCTGCT
gatctgttggcattcttcctcatttgagcatgaactttgtctttacactctgcagAGCGATGCTGCAGATGCTCTATCAAGATTCTATTATCCACCGGTTGCTGCTGTAACTGTTTCGTATCCAAAGGAAGCAATTAGAAAAGAATGCTTAATTG
tctttac CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgatggacggtggagtggtggacgatcatttacattttactatgatctgttggcattcttcctcatttgagcatgaactttgtctttacactctgcagAGCGATGCTGCAGATGCTCTATCAAGATTCTATTATCCACCGGTTGCTGCTGTAACTGTTTCGTATCCAAAGGAAGCAATTAGAAAAGAATGCTTAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
attgatg
- - - - - - - - - - - - - - - - tacattt
- - - - - - - - - - - - - - - - - - - - - - - - ctgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgaa