Sequence
atgc intronic sequence ATGC exonic sequencegtaagtccatcggctattcggcttcatttagatcattaaattttgtgcatatgctttctcaaaattacttatgtgattcatgtattactgttatcgtcatctttatgcattattttcaactgcaagaattatatttatctatcttatcctcatatccagGCATTTCTGGAGCAAAAGCTTGTGGAATTTGATAGGATGGAGAGGTTGAATCATTTTGTTTTAACTGATTCCGATATAGCAGTGGTTGGTGATCTTGGAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G038667_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g37430.1 (Oryza sativa), 3'ss of exon 3
gtaagtccatcggctattcggcttcatttagatcattaaattttgtgcatatgctttctcaaaattacttatgtga--ttcatgtattactgttatcgtcatctttatgcattattttcaactgcaagaattatatttatctatcttatcctcatatccagGCATTTCTGGAGCAAAAGCTTGTGGAATTTGATAGGATGGAGAGGTTGAATCATTTTGTTTTAACTGATTCCGATATAGCAGTGGTTGGTGATCTTGGAC
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-------------------------------------------------------cattctacttctatcaggccatctttatgcatttattttttcttgagctctaagtttctttttt--ctg-gagctctaagttt-tgtgtattgtcc--atgttcagGCCTTTCTGGAGCAAAGACTTGAGGAGCTTGAGACAGTGGAAGATATAAATCATCTAATTTTCACTGATTCTGATATAGCAGTGGTTACTGATCTTGGACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71435798|gb|DR816848.1|DR816848EST: GAAACTATTCTCGAGGAAATTTGATGCTTCAGAGAATAAAGACATACATT GCATTTCTGGAGCAAAAGCTTGTGGAATTTGATAGGATGGAGAGGTTGAAT
genomic: GAAACTATTCTCGAGGAAATTTGATGCTTCAGAGAATAAAGACATACATTgtaagtccat ... tcatatccagGCATTTCTGGAGCAAAAGCTTGTGGAATTTGATAGGATGGAGAGGTTGAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgcattattttcaactgcaagaattatatttatctatcttatcctcatatccagGCATTTCTGGAGCAAAAGCTTGTGGAATTTGATAGGATGGAGAGGTTGAATCATTTTGTTTTAACTGATTCCGATATAGCAGTGGTTGGTGATCTTGGAC
tctatcttatcctc CT-rich tract
aagaattatatttatc TA-rich tract