1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttggttattaccggttgtttattctgaacttcatggacaactcagccgctgttgtatactcaagcaatcagctggagctggctgatgatgctgatgctcatctatcggttgggtgtgatgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG
species | Zea mays |
transcript | GRMZM2G038598_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAAEST: gi|148951201|gb|EC896889.2|EC896889
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAAEST: gi|50324852|gb|CO519978.1|CO519978
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAAEST: gi|74237590|gb|DT645504.1|DT645504
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAAEST: gi|31250360|gb|CD219384.1|CD219384
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: CGGCCACATAGCAGCCCTGAGGAAGCTCCACGAAGACTCCGACAAAATAG GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAAEST: gi|74240923|gb|DT648837.1|DT648837
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAAEST: gi|71440044|gb|DR821094.1|DR821094
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAAEST: gi|74237589|gb|DT645503.1|DT645503
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAAEST: gi|78085824|gb|DV514217.1|DV514217
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAAEST: gi|149087171|gb|EE176707.2|EE176707
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAAEST: gi|18660097|gb|BM500685.1|BM500685
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCCGTGTTGGAAAEST: gi|71429156|gb|DR810206.1|DR810206
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAAEST: gi|69351133|gb|DR452031.1|DR452031
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: CGGCCACATAGCAGCCCTGAGGAAGCTCCACGAAGACTCCGACAAAATAG GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAAEST: gi|58029768|gb|CX725195.1|CX725195
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: CGGCCACATAGCAGCCCTGAGGAAGCTCCACGAAGACTCCGACAAAATAG GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAAEST: gi|116828756|gb|EC860854.1|EC860854
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: CGGCCACATAG-AGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAAEST: gi|50335983|gb|CO531109.1|CO531109
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAAEST: gi|18163517|gb|BM333356.1|BM333356
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: GCTCTACGAAGACTCCGACAAAATAG GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAAEST: gi|78121122|gb|DV539506.1|DV539506
genomic: GCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAAEST: gi|78085825|gb|DV514218.1|DV514218
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
tggagctggctgatgatgctgatgctcatctatcggttgggtgtgatgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG
tgctgat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttattaccggttgtttattctgaacttcatggacaactcagccgctgttgtatactcaagcaatcagctggagctggctgatgatgctgatgctcatctatcggttgggtgtgatgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG