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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaggaaatcctgctatgatgcagtggcaaaagtgtattgtgttgtattgtattgtattgtaacggtgtgttctgatcatccaacagATAGTGATGGAACTGCCAGTTGAACATGGACTACTCCTGGATAACCTCTTGGACCTTGCTCATGCTCCTTTTACACACACATCCACCTTTGCCAAGGGCT

Basic information

species Zea mays
transcript GRMZM2G038487_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038487_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 3'ss of exon 6
gtaaaaggaaatcctgctatgatgcagtg----------gcaaaagtgtattgtg-----------ttgtattgtattgtattgtaacggtgt-gttct-gatcatccaacagATAGTGATGGAACTGCCAGTTGAACATGGACTACTCCTGGATAACCTCTTGGACCTTGCTCATGCTCCTTTTACACACACATCCACCTTTGCCAAGGGCT
||||||||| ||| ||  ||| |||||            |   || |||  ||||           || || || | || |  |||| ||  | ||||| ||||||| |||||||||||||||| || ||||| || |||||||| || ||||| || || || || |||||||||||||||||||| || |||||||||||||||||||| |
gtaaaaggagatcatgtcatgctgcagcaaccatactatgtggaactgtcctgtgcatttcaagatttttactggactgaaaagtaatggaattgttcttgatcatc-aacagATAGTGATGGAGCTACCAGTGGAGCATGGACTTCTTCTGGACAATCTATTAGATCTTGCTCATGCTCCTTTTACTCATACATCCACCTTTGCCAAGGGTT

upper sequence: GRMZM2G038487_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 3'ss of exon 6
gtaaaaggaaatcctgctatgatgcag----------tggcaaaagtgtattgtgttgt-------------attgtattgtattgtaacgg--tgtgttctgatcatccaacagATAGTGATGGAACTGCCAGTTGAACATGGACTACTCCTGGATAACCTCTTGGACCTTGCTCATGCTCCTTTTACACACACATCCACCTTTGCCAAGGGCT
|||||| |||||| ||  ||  |||||          |||  |||||||  |||||| |             | || | ||||  |||| ||  | | |  | |||||| ||||||| |||||||| || || || || |||||||| || ||||| || || || ||  ||||||||||||||||| | || || ||||||||||||||||| |
gtaaaacgaaatcatgtcatactgcagcaatcttccatggtgaaagtgtcctgtgtttttcaagttttttttactggactgtaaagtaatggaatttatcttcatcatc-aacagATGGTGATGGAGCTACCGGTGGAGCATGGACTTCTGCTGGACAATCTATTAGATATTGCTCATGCTCCTTTTGCTCATACGTCCACCTTTGCCAAGGGTT

upper sequence: GRMZM2G038487_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA14G23860.1 (Glycine max), 3'ss of exon 6
--------------------------------------------gtaaaaggaaatc-ctgctatgatgcagtggcaaaagtgtattgtgttgtattgtattgtattgtaacggtgtgttctgatcatccaacagATAGTGATGGAACTGCCAGTTGAACATGGACTACTCCTGGATAACCTCTTGGACCTTGCTCATGCTCCTTTTACACACACATCCACCTTTGCCAAGGGCT
                                            | ||||  |||    | | || ||    | |   ||  | |           ||| || | || |   |||| | |||   | |   |||||| ||||||||||| ||| ||||||||||  ||||  |||| || || ||||| ||||| ||||| |||||||| ||||| || || ||||| ||||| |
gtatgttatgaatataatctgtcccgttaggtattgtgctcgatgcaaaataaaagaattacaattatatgattgattaaaagaaaaaga--aacctgtgttttcttatt-tggtg-gctcttcacttgttacagATTGTGATGGAACTTCCAATTGAACATGGCTTACTTTTGGACAATCTTTTGGATCTTGCACATGCCCCTTTTACGCACACCTCAACATTTGCTAAGGGAT

upper sequence: GRMZM2G038487_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA13G03430.1 (Glycine max), 3'ss of exon 6
-----------------------------------------gtaaaaggaaatcctgctatgatgcagtggcaaaagtgtattgtgttgtattgtattgtattgtaacggtgtgttctgatcatccaacagATAGTGATGGAACTGCCAGTTGAACATGGACTACTCCTGGATAACCTCTTGGACCTTGCTCATGCTCCTTTTACACACACATCCACCTTTGCCAAGGGCT
                                         | | ||   ||      ||  ||    ||    |  |  |       | |   | |  | |  ||   ||  |||||   | |   |||||| ||||||||||| ||| ||||||| ||  ||||  |||| || || ||||| ||||| ||||| |||||||| ||||| || || ||||| ||||| |
gtatgttatgaatataatctgtcccttaggtagtgttcgatgcacaaaataaaagaattacaattatatgattgat-taaaagaaaaagaaacctgtgttttcttacttgttggttcttcacttgttacagATTGTGATGGAACTTCCAATTGAACACGGTTTACTTTTGGACAATCTTTTGGATCTTGCACATGCCCCTTTTACTCACACCTCAACATTTGCTAAGGGAT

upper sequence: GRMZM2G038487_T01 (Zea mays), 3'ss of exon 6
lower sequence: Vv18s0001g02700.t01 (Vitis vinifera), 3'ss of exon 5
-----------gtaaaaggaaatcctgctatgatgc-agtggcaaaagtgtattgtgttgtattgtattgtattgtaacggtgtgttctgatcatccaacagATAGTGATGGAACTGCCAGTTGAACATGGACTACTCCTGGATAACCTCTTGGACCTTGCTCATGCTCCTTTTACACACACATCCACCTTTGCCAAGGGCT
            |  |   | ||| | || |  |   | |    |||  | |||    | |  | |  |   || || |  | | || ||   ||    ||||| || |||||||| ||||| |||||||| || || ||||||||||| ||||| ||||| ||||| ||||| || || ||||||||||||||||| || |
gtatgttatcaatgcattcagatctttctgttgtttgaatacttaaaaggcatt----tttggtctcctcatttctatcattattttttgggaatt--gcagATTGTCATGGAACTTCCAGTGGAACATGGGCTTCTTCTGGATAACCTTTTGGATCTTGCACATGCCCCTTTCACTCATACATCCACCTTTGCCAAAGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtattgtgttgtattgtattgtattgtaacggtgtgttctgatcatccaacagATAGTGATGGAACTGCCAGTTGAACATGGACTACTCCTGGATAACCTCTTGGACCTTGCTCATGCTCCTTTTACACACACATCCACCTTTGCCAAGGGCT
             tattgtattgtatt  TA-rich tract