1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...caaccaataaccttggaaagtcccaagaaggaaagtgatgatggcagccaaaacaacaattcctactgagctaaacaaagtaaactctcatttctcgcagGGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCAGAGGTTCAAACACCCATTATCATAGATCAGTTTTATTGTGACAGAAGCA
species | Zea mays |
transcript | GRMZM2G037431_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAG GGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCAEST: gi|60340414|gb|DN207387.1|DN207387
genomic: ATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAGgtaagcttga ... tttctcgcagGGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCA
EST: ATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAG GGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCAEST: gi|211262643|gb|FL444365.1|FL444365
genomic: ATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAGgtaagcttga ... tttctcgcagGGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCA
EST: ATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAG GGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCAEST: gi|91872777|gb|EB402734.1|EB402734
genomic: ATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAGgtaagcttga ... tttctcgcagGGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCA
EST: ATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAG GGTGGGGTAGGATTGGTTCAAGACATAAGGTTTTCAAATATACAAGTCTCAEST: gi|91054377|gb|EB164795.1|EB164795
genomic: ATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAGgtaagcttga ... tttctcgcagGGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCA
EST: ATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAG GGTGGCGTAGGATTGGTTCAAGACATAAGGTTTTCAAATATACAAGTCTCAEST: gi|71772110|gb|DR970047.1|DR970047
genomic: ATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAGgtaagcttga ... tttctcgcagGGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCA
EST: ATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAG GGTGGGGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCAEST: gi|4388085|gb|AI491257.1|AI491257
genomic: ATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAGgtaagcttga ... tttctcgcagGGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCA
EST: ATGTC-ACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAG GGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCAEST: gi|211470816|gb|FL467302.1|FL467302
genomic: ATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAGgtaagcttga ... tttctcgcagGGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCA
EST: ATGTCAACAGGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAG GGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTATCAEST: gi|211262642|gb|FL444364.1|FL444364
genomic: ATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAGgtaagcttga ... tttctcgcagGGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCA
EST: ATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAG GGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCAEST: gi|31405685|gb|CD484417.1|CD484417
genomic: ATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAGgtaagcttga ... tttctcgcagGGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCA
EST: ATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAG GGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCA
genomic: ATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAGgtaagcttga ... tttctcgcagGGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCA
agccaaaacaacaattcctactgagctaaacaaagtaaactctcatttctcgcagGGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCAGAGGTTCAAACACCCATTATCATAGATCAGTTTTATTGTGACAGAAGCA
agctaaa putative branch site (score: 11)
ctctcatttctcgc putative PPT
taaacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaccaataaccttggaaagtcccaagaaggaaagtgatgatggcagccaaaacaacaattcctactgagctaaacaaagtaaactctcatttctcgcagGGTGGCGTAGGATTGGTTCAAGACATAAGGTTCTCAAATATACAAGTCTCAGAGGTTCAAACACCCATTATCATAGATCAGTTTTATTGTGACAGAAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
caaccaa
- - - - - - - - - - - - - gaaggaaa
- - - - - - - - - - - - - - - - - -tgatgat
- - - - - - - - - - - - - - - - - - - - - - - - -aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa