1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcatgctttgccacgcgccttcgttcttccactatgatacagccgccatgacagccccgacggtcatttaacaggattgtaccttgtttttttttttcagATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATGATAGACGCAATCGACAGAGTACGAGTTCGAGGGGATTCGGTCGGTGGAG
species | Zea mays |
transcript | GRMZM2G036861_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCACATGTGGATTAGAG ATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATGEST: gi|71442820|gb|DR823870.1|DR823870
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... tttttttcagATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATG
EST: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG ATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATGEST: gi|148995329|gb|EE034551.2|EE034551
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... tttttttcagATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATG
EST: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG ATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATGEST: gi|149036977|gb|EE155215.2|EE155215
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... tttttttcagATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATG
EST: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG ATAGAGAGCAACATCGTTAGATGTCCTGATEST: gi|149078720|gb|EE167520.2|EE167520
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... tttttttcagATAGAGAGCAACATCGTTAGATGTCCTGAT
EST: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG ATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATGEST: gi|71768469|gb|DR966406.1|DR966406
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... tttttttcagATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATG
EST: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG ATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATGEST: gi|148947516|gb|EC892976.2|EC892976
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... tttttttcagATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATG
EST: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG ATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATGEST: gi|78109644|gb|DV528060.1|DV528060
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... tttttttcagATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATG
EST: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG ATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATG
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... tttttttcagATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATG
ccatgacagccccgacggtcatttaacaggattgtaccttgtttttttttttcagATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATGATAGACGCAATCGACAGAGTACGAGTTCGAGGGGATTCGGTCGGTGGAG
atttaac putative branch site (score: 3)
ttgtaccttgtttttt putative PPT
ttgtttttttttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgctttgccacgcgccttcgttcttccactatgatacagccgccatgacagccccgacggtcatttaacaggattgtaccttgtttttttttttcagATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATGATAGACGCAATCGACAGAGTACGAGTTCGAGGGGATTCGGTCGGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG