Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaatctctgacactattgctggactctgtattcctgttagttcaataatgtgctatcgtcttgttatgttacagTACTGGGATGAAAGGCGATTGCAGTACCCTATCTACTTCCTGACAAATGTGTCGACAAGTACCGTTGATTATGTCAAGAGTTTTCTTGAATGGATGGGTG

Basic information

species Zea mays
transcript GRMZM2G036050_T05
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036050_T05 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os09g39590.1 (Oryza sativa), 3'ss of exon 6
gtaaaaatctct-gacactattgctggactctgtattcctgttagttcaataatgtg-----ctatcgtcttgttatgttacagTACTGGGATGAAAGGCGATTGCAGTACCCTATCTACTTCCTGACAAATGTGTCGACAAGTACCGTTGATTATGTCAAGAGTTTTCTTGAATGGATGGGTG
|| |||   |   |    | ||   | ||| | |  |  |||||  |||||||| ||     || | |||||| | | || |||||||||| | || |||  |||   |||||||||||||| ||||||||||| || || ||||| |||||||||||||||||||||||||||||||||  ||
gtgaaatcttgaaggtcttgttctcgtactgttttattttgttatgtcaataatatgttcaccttttgtcttgatttattgcagTACTGGGCTCAACGGCATTTGATCTACCCTATCTACTTTCTGACAAATGTTTCTACGAGTACTGTTGATTATGTCAAGAGTTTTCTTGAATGGATGAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31361140|gb|CD445497.1|CD445497
EST:     CTGTTGACACGGCTGGTAGAGTGTTGGAACTTCTTTTGTTATTGGATATG                         TACTGGGATGAAAGGCGATTGCAGTACCCTATCTACTTTCCTGACAA-TGT
genomic: CTGTTGACACGGCTGGTAGAGTGTTGGAACTTCTTTTGTTATTGGATATGgtaaaaatct ... tatgttacagTACTGGGATGAAAGGCGATTGCAGTACCCTATCTACTT-CCTGACAAATGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggactctgtattcctgttagttcaataatgtgctatcgtcttgttatgttacagTACTGGGATGAAAGGCGATTGCAGTACCCTATCTACTTCCTGACAAATGTGTCGACAAGTACCGTTGATTATGTCAAGAGTTTTCTTGAATGGATGGGTG
                                       tcttgtt  CT-rich tract
                     ttcaataat  TA-rich tract