1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atcagtagtgctagagttcagagtttcagcagatgcttgttggttgttttacctagaactccagaaggtgcttaacattgtctttgagttgtttgtttagGTGCAAGGGTGAAAAGAGGAGGTTCTACTGGGGTGATCTGAAGATGGCCATATGTTCCGACTTCCGAGTTGTTGGCGAAGACAGACCCATCAATGATTTA
species | Zea mays |
transcript | GRMZM2G035595_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
gttttacctagaactccagaaggtgcttaacattgtctttgagttgtttgtttagGTGCAAGGGTGAAAAGAGGAGGTTCTACTGGGGTGATCTGAAGATGGCCATATGTTCCGACTTCCGAGTTGTTGGCGAAGACAGACCCATCAATGATTTA
gcttaac putative branch site (score: 3)
tttgttt putative PPT
ttaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcagtagtgctagagttcagagtttcagcagatgcttgttggttgttttacctagaactccagaaggtgcttaacattgtctttgagttgtttgtttagGTGCAAGGGTGAAAAGAGGAGGTTCTACTGGGGTGATCTGAAGATGGCCATATGTTCCGACTTCCGAGTTGTTGGCGAAGACAGACCCATCAATGATTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - -gtgctag
- - - - - - - - - - - - -tcagcag
- - - - - - - - - - - - - - - - -tgcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgctt