1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gatgatcatatccatttgacctccatgatgcattctttcacgaaaataggaaatggtttctttcacttctctacctgaacatattttttgccatttgcagGTGAATCTAGTTGACTGGCTAAAAATGATGGTTGCCAGCAGGCGGTCAGAAGAAGTAGTGGATCCCACCATAGAGACACGACCTTCGACGAGAGCTCTAA
species | Zea mays |
transcript | GRMZM2G034855_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGCAATTACCGGAAGGGATCCTGTTGACTATGGACGCCCACCAAACGAG GTGAATCTAGTTGACTGGCTAAAAATGATGGEST: gi|60397397|gb|DN230213.1|DN230213
genomic: AAGCAATTACCGGAAGGGATCCTGTTGACTATGGACGCCCACCAAACGAGgtattgataa ... ccatttgcagGTGAATCTAGTTGACTGGCTAAAAATGATGG
EST: AAGCAATTACCGGAAGGGATCCTGTTGACTATGGACGCCCACCAAACGAG GTGAATCTAGTTGACTGGCTAAAAATGATGGTTGCCAGCAGGCGGTCAGAAEST: gi|5936692|gb|AW059960.1|AW059960
genomic: AAGCAATTACCGGAAGGGATCCTGTTGACTATGGACGCCCACCAAACGAGgtattgataa ... ccatttgcagGTGAATCTAGTTGACTGGCTAAAAATGATGGTTGCCAGCAGGCGGTCAGAA
EST: AAGCAATTACCGGAAGGGATCCTGTTGACTATGGACGCCCACCAAACGAG GTGAATCTAGTTGACTGGCTAAAAATGATGGTTGCCAGCAGGCGGTCAGAAEST: gi|40334583|gb|CK368653.1|CK368653
genomic: AAGCAATTACCGGAAGGGATCCTGTTGACTATGGACGCCCACCAAACGAGgtattgataa ... ccatttgcagGTGAATCTAGTTGACTGGCTAAAAATGATGGTTGCCAGCAGGCGGTCAGAA
EST: AAGCAATTACCGGAAGGGATCCTGTTGACTATGGACGCCCACCAAACGAG GTGAATCTAGTTGACTGGCTAAAAATGATGGTTGCCAGCAGGCGGTCAGAA
genomic: AAGCAATTACCGGAAGGGATCCTGTTGACTATGGACGCCCACCAAACGAGgtattgataa ... ccatttgcagGTGAATCTAGTTGACTGGCTAAAAATGATGGTTGCCAGCAGGCGGTCAGAA
ataggaaatggtttctttcacttctctacctgaacatattttttgccatttgcagGTGAATCTAGTTGACTGGCTAAAAATGATGGTTGCCAGCAGGCGGTCAGAAGAAGTAGTGGATCCCACCATAGAGACACGACCTTCGACGAGAGCTCTAA
ttttttgcc CT-rich tract
tgaacatatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgatcatatccatttgacctccatgatgcattctttcacgaaaataggaaatggtttctttcacttctctacctgaacatattttttgccatttgcagGTGAATCTAGTTGACTGGCTAAAAATGATGGTTGCCAGCAGGCGGTCAGAAGAAGTAGTGGATCCCACCATAGAGACACGACCTTCGACGAGAGCTCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT