1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctgtgctgaaacttttcctggcgctccacacattggtcgttattgggactgaatgcactttgactgcttgcttaacttttaagtgtttcctccttttcagCGTAAAGGATCTCAAGTTTTTGCTGGAGCGCTATGGCTGGTGCTGCCTGCTTTCTGCAGCTTCTTATCTGGAAAGGGGAAATTGGGTATCAGGCATACAT
species | Zea mays |
transcript | GRMZM2G034372_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGTAGACAAAAAAGTAGCTGCTGCATCTGGGGTTTGTATTTTATAGCAG CGTANAGGATCTCAAGTTTTTGCTGGAGCGCTATGGCTGGTGCTGCCTGCTEST: gi|16916393|gb|BM072826.1|BM072826
genomic: TTGTAGACAAAAAAGTAGCTGCTGCATCTGGGGTTTGTATTTTATAGCAGgtaccttttt ... tccttttcagCGTAAAGGATCTCAAGTTTTTGCTGGAGCGCTATGGCTGGTGCTGCCTGCT
EST: TTGTAGACAAAAAAGTAGCTGCTGCATCTGGGGTTTGTATTTTATAGCAG CGTAAAGGATCTCAAGTTTTTGCTGGAGCGCTATGGCTGGTGCTGCCTGCT
genomic: TTGTAGACAAAAAAGTAGCTGCTGCATCTGGGGTTTGTATTTTATAGCAGgtaccttttt ... tccttttcagCGTAAAGGATCTCAAGTTTTTGCTGGAGCGCTATGGCTGGTGCTGCCTGCT
ggactgaatgcactttgactgcttgcttaacttttaagtgtttcctccttttcagCGTAAAGGATCTCAAGTTTTTGCTGGAGCGCTATGGCTGGTGCTGCCTGCTTTCTGCAGCTTCTTATCTGGAAAGGGGAAATTGGGTATCAGGCATACAT
gcttaac putative branch site (score: 8)
tgtttcctccttttc putative PPT
ttaacttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtgctgaaacttttcctggcgctccacacattggtcgttattgggactgaatgcactttgactgcttgcttaacttttaagtgtttcctccttttcagCGTAAAGGATCTCAAGTTTTTGCTGGAGCGCTATGGCTGGTGCTGCCTGCTTTCTGCAGCTTCTTATCTGGAAAGGGGAAATTGGGTATCAGGCATACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- -tgctgaa
- - - - - - - -tcctggc
- - - - - - - - - - - gctccac
- - - - - - - - - - - - - - - - - - - - - - - - -tgaatgc