1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgttcatgtaaaagtggacaacttacattcgattccaacctttctccttgaagtaattatttcattttccagtgtttacatttctatttggattaacttttattgacagttctgtatgttccactagatttaagtagtgaaccacttctcttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGACAATGGTTGCAGGTGGTGGTGCTAGTGTCATATACGCAGACACT
species | Zea mays |
transcript | GRMZM2G034083_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTAEST: gi|67023264|gb|CO452013.1|CO452013
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTA
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|40303556|gb|CK347943.1|CK347943
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCGTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|31357444|gb|CD441801.1|CD441801
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|67013475|gb|CO442224.1|CO442224
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCACTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|211020101|gb|FL063974.1|FL063974
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|18964714|gb|BM661164.1|BM661164
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCG-AAGTTTTATCCATGAACTGGATGAGATG AC-AGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|60353107|gb|DN220080.1|DN220080
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGCGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|18964715|gb|BM661165.1|BM661165
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|22490798|gb|BU050721.1|BU050721
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|67025367|gb|CO454116.1|CO454116
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|7238111|gb|AW573333.1|AW573333
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCGTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|44901489|gb|CK828034.1|CK828034
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCGGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCGTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGTEST: gi|149008522|gb|EE040695.2|EE040695
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: CCATGAACGGGATGGGAAG ACAAGTGCTTTTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|19058295|gb|BM736962.1|BM736962
genomic: CCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG CCAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|78103680|gb|DV522108.1|DV522108
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|31353311|gb|CD437668.1|CD437668
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|13150060|gb|BG320382.1|BG320382
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|37400570|gb|CF637640.1|CF637640
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: CCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|31354936|gb|CD439293.1|CD439293
genomic: CCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|60339101|gb|DN206074.1|DN206074
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: G-AGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|19057819|gb|BM736486.1|BM736486
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|84980549|gb|DW530898.1|DW530898
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAACTGGATGAGAAG AC-AGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|87151765|gb|DY396554.1|DY396554
genomic: GAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|67042517|gb|CO468772.1|CO468772
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCGTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|32859101|gb|CD998782.1|CD998782
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|67022701|gb|CO451450.1|CO451450
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|149000524|gb|EE037707.2|EE037707
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: AAGAGTTTTCAGTCCCTCCGAAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTTTCTGAAATTCACGGTACTGAACCAAAAAGGACGCATCTGGEST: gi|60350340|gb|DN217313.1|DN217313
genomic: AAGAGTTCTCAGTCCCTCCG-AAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: AAAGTTTTATCCATGAACTGGATGAGAAG ACAAGCGCTTTTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|33104123|gb|CF064083.1|CF064083
genomic: AAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTEST: gi|166544546|gb|EG308464.1|EG308464
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGT
EST: CTGGATGAGAAG ACAAGTGCGTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|37401585|gb|CF638160.1|CF638160
genomic: CTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCGTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGEST: gi|67016541|gb|CO445290.1|CO445290
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGA-GCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
gacagttctgtatgttccactagatttaagtagtgaaccacttctcttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGACAATGGTTGCAGGTGGTGGTGCTAGTGTCATATACGCAGACACT
tattgac putative branch site (score: 2)
ccacttctcttcttgc putative PPT
tagatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttcatgtaaaagtggacaacttacattcgattccaacctttctccttgaagtaattatttcattttccagtgtttacatttctatttggattaacttttattgacagttctgtatgttccactagatttaagtagtgaaccacttctcttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGACAATGGTTGCAGGTGGTGGTGCTAGTGTCATATACGCAGACACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG