1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tacaggtctaggtttgataaacaaaaatgaaaataatgccatcatgtactccttagttataattctagtctcctagacactgaacttgaaatcttttcagGCAATGGTGGCGCGTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTTCCTTTGCTACAG
species | Zea mays |
transcript | GRMZM2G033526_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGCAGATTCAATACCACACCTGCAGTCCATTATTGCTGCTTCAGATGGG GCAATGGTGGCGCGTGGAGACCTTGNG-GCTGAACTTCCGATTGAGGATGTEST: gi|13177889|gb|BG349072.1|BG349072
genomic: GTGCAGATTCAATACCAAACCTGCAGTCCATTATTGCTGCTTCAGATGGGgtaagaccat ... atcttttcagGCAATGGTGGCGCGTGGAGACCTTG-GTGCTGAACTTCCGATTGAGGATGT
EST: GTGCAGATTCAATACCAAACCTGCAGTCCATTATTGCTGCTTCAGATGGG GCAATGGTGGCGCGTGGAGACCTTGEST: gi|87155458|gb|DY400247.1|DY400247
genomic: GTGCAGATTCAATACCAAACCTGCAGTCCATTATTGCTGCTTCAGATGGGgtaagaccat ... atcttttcagGCAATGGTGGCGCGTGGAGACCTTG
EST: GTGCAGATTC-ATACCAAACCTGCAGTCCATTATTGCTGCTTCAGATGGG GCAATGGTGGCGCGTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTTEST: gi|60341691|gb|DN208664.1|DN208664
genomic: GTGCAGATTCAATACCAAACCTGCAGTCCATTATTGCTGCTTCAGATGGGgtaagaccat ... atcttttcagGCAATGGTGGCGCGTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTT
EST: GTGCAGATTCAATACCAAACCTGCAGTCCATTATTGCTGCTTCAGATGGG GCAATGGTGGCGCGTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTTEST: gi|67016939|gb|CO445688.1|CO445688
genomic: GTGCAGATTCAATACCAAACCTGCAGTCCATTATTGCTGCTTCAGATGGGgtaagaccat ... atcttttcagGCAATGGTGGCGCGTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTT
EST: GTGCAGATTCAATACCAAACCTGCAGTCCATTATTGCTGCTTCAGATGGG GCAATGGTGGCGCGTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTTEST: gi|67022089|gb|CO450838.1|CO450838
genomic: GTGCAGATTCAATACCAAACCTGCAGTCCATTATTGCTGCTTCAGATGGGgtaagaccat ... atcttttcagGCAATGGTGGCGCGTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTT
EST: GTGCAGATTCAATACCAAACCTGCAGTCCATTATTGCTGCTTCAGATGGG GCAATGGTGGCGCGTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTT
genomic: GTGCAGATTCAATACCAAACCTGCAGTCCATTATTGCTGCTTCAGATGGGgtaagaccat ... atcttttcagGCAATGGTGGCGCGTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTT
gtactccttagttataattctagtctcctagacactgaacttgaaatcttttcagGCAATGGTGGCGCGTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTTCCTTTGCTACAG
tcttttc CT-rich tract
ttagttataattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaggtctaggtttgataaacaaaaatgaaaataatgccatcatgtactccttagttataattctagtctcctagacactgaacttgaaatcttttcagGCAATGGTGGCGCGTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTTCCTTTGCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG