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gtatttagcaaaaatatgaaactaccctgcatttttgtgtgcaataatggtttccccctaaattgaaatgtttgtgaaatcagGATGGACGAAGCCCATCTGCATTGGAAGGCATGCCTTCGGTGATCAGTACCGAGCTACTGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTT
species | Zea mays |
transcript | GRMZM2G033515_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTGTTCAGAGAACCAATTATATGCAAAAACGTTCCAAGGCTTGTTCCAG GATGGACGAAGCCCATCTGCATTGGAAGGCATGCCTTCGGTGATCAGTACCEST: gi|31353696|gb|CD438053.1|CD438053
genomic: TGTGTTCAGAGAACCAATTATATGCAAAAACGTTCCAAGGCTTGTTCCAGgtatttagca ... gtgaaatcagGATGGACGAAGCCCATCTGCATTGGAAGGCATGCCTTCGGTGATCAGTACC
EST: TGTGTTCAGAGAACCAATTATATGCAAAAACGTTCCAAGGCTTGTTCCAG GATGGACGAAGCCCATCTGCATTGGAAGGCATGCCTTCGGTGATCAGTACCEST: gi|84980627|gb|DW530976.1|DW530976
genomic: TGTGTTCAGAGAACCAATTATATGCAAAAACGTTCCAAGGCTTGTTCCAGgtatttagca ... gtgaaatcagGATGGACGAAGCCCATCTGCATTGGAAGGCATGCCTTCGGTGATCAGTACC
EST: TGTGTTCAGAGAACCAATTATATGCAAAAACGTTCCAAGGCTTGTTCCAG GATGGACGAAGCCCATCTGCATTGGAAGGCATGCCTTCGGTGATCAGTACCEST: gi|61119247|gb|DN560208.1|DN560208
genomic: TGTGTTCAGAGAACCAATTATATGCAAAAACGTTCCAAGGCTTGTTCCAGgtatttagca ... gtgaaatcagGATGGACGAAGCCCATCTGCATTGGAAGGCATGCCTTCGGTGATCAGTACC
EST: TGTGTTCAGAGAACCAATTATATGCAAAAACGTTCCAAGGCTTGTTCCAG GATGGACGAAGCCCATCTGCATTGGAAGGCATGCCTTCGGTGATCAGTACCEST: gi|78092177|gb|DV520551.1|DV520551
genomic: TGTGTTCAGAGAACCAATTATATGCAAAAACGTTCCAAGGCTTGTTCCAGgtatttagca ... gtgaaatcagGATGGACGAAGCCCATCTGCATTGGAAGGCATGCCTTCGGTGATCAGTACC
EST: TGTGTTCAGAGAACCAATTATATGCAAAAACGTTCCAAGGCTTGTTCCAG GATGGACGAAGCCCATCTGCATTGGAAGGCATGCCTTCGGTGATCAGTACC
genomic: TGTGTTCAGAGAACCAATTATATGCAAAAACGTTCCAAGGCTTGTTCCAGgtatttagca ... gtgaaatcagGATGGACGAAGCCCATCTGCATTGGAAGGCATGCCTTCGGTGATCAGTACC
gcatttttgtgtgcaataatggtttccccctaaattgaaatgtttgtgaaatcagGATGGACGAAGCCCATCTGCATTGGAAGGCATGCCTTCGGTGATCAGTACCGAGCTACTGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTT
ccctaaa putative branch site (score: 47)
taaattgaaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttagcaaaaatatgaaactaccctgcatttttgtgtgcaataatggtttccccctaaattgaaatgtttgtgaaatcagGATGGACGAAGCCCATCTGCATTGGAAGGCATGCCTTCGGTGATCAGTACCGAGCTACTGATGCAGTTCTGAAGGGGCCTGGGAAGCTGAAGCTAGTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC