1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaacaacctcgcgacttaatcaattaactgcagtttgcgctgttgcttttcaatttgctataatacttatcctgatcacaactcaaatttcatggtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCATACTACCGCCGCATGAGGTGGTCAGTCTTGAAGTCCCGTAAGCTGGTCC
species | Zea mays |
transcript | GRMZM2G032367_T04 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCAEST: gi|71763205|gb|DR961142.1|DR961142
genomic: CCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... ttcatggtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCA
EST: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCAEST: gi|5006059|gb|AI712121.1|AI712121
genomic: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... ttcatggtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCA
EST: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAAAGAAAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCCCTAGCGCTTCTTCAAGCTGCAEST: gi|14245130|gb|BG873712.1|BG873712
genomic: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... ttcatggtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCA
EST: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCAEST: gi|76290228|gb|DV029796.1|DV029796
genomic: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... ttcatggtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCA
EST: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTTTACTATCACTAGCGCTTCTTCAAGCTGCAEST: gi|32938109|gb|CF042928.1|CF042928
genomic: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... ttcatggtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCA
EST: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTCCTACTATCACTAGCGCTTCTTCAAGCTGCAEST: gi|71757789|gb|DR955726.1|DR955726
genomic: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... ttcatggtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCA
EST: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTTTACTATCACTAGCGCTTCTTCAAGCTGCAEST: gi|5608164|gb|AI901831.1|AI901831
genomic: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... ttcatggtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCA
EST: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCAEST: gi|211323657|gb|FL286663.1|FL286663
genomic: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... ttcatggtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCA
EST: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTCCTACTATCACTAGCGCTTCTTCAAGCTGCAEST: gi|37386374|gb|CF630373.1|CF630373
genomic: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... ttcatggtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCA
EST: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTCCTACTATCACTAGCGCTTCTTCAAGCTGCAEST: gi|37419011|gb|CF647179.1|CF647179
genomic: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... ttcatggtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCA
EST: GAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCAEST: gi|32939220|gb|CF044039.1|CF044039
genomic: GAGAGAAAGCTGgtaacaacct ... ttcatggtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCA
EST: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTCCTACTATCACTGGCGCTTCTTCAAGCTGCAEST: gi|29947382|gb|CB816627.1|CB816627
genomic: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... ttcatggtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCA
EST: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCAEST: gi|37419478|gb|CF647422.1|CF647422
genomic: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... ttcatggtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCA
EST: GAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCAEST: gi|78026464|gb|DV494851.1|DV494851
genomic: GAAGAGAGAAAGCTGgtaacaacct ... ttcatggtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCA
EST: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCA
genomic: TATCATTCCTTTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... ttcatggtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCA
tgcttttcaatttgctataatacttatcctgatcacaactcaaatttcatggtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCATACTACCGCCGCATGAGGTGGTCAGTCTTGAAGTCCCGTAAGCTGGTCC
tcctgat putative branch site (score: 167)
aatttgctataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaacctcgcgacttaatcaattaactgcagtttgcgctgttgcttttcaatttgctataatacttatcctgatcacaactcaaatttcatggtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTTCAAGCTGCATACTACCGCCGCATGAGGTGGTCAGTCTTGAAGTCCCGTAAGCTGGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG