1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgatccatccacatctctttttgacctcattatttgttgaaaacaagtgctcattgagaggctataccatttgcagTTCCAATATGGTAATCCTGATGTCTTGTGCTCCCCACTAGCTGAAGCAAAGAAGAATGGGACAGATTTGGTG
species | Zea mays |
transcript | GRMZM2G031572_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAATTGATGGTGACTTCCTCTACTTACTGGCAGATGCTGCTGCTATTGCG TTCCAA-ATGGAAATCCTGATGTCCTGGGCTCCCCACTAEST: gi|91877512|gb|EB407469.1|EB407469
genomic: AAAT-GATGGTGACTTCCTCTACTTACTGGCAGATGCTGCTGCTATTGCGgtatgatcca ... ccatttgcagTTCCAATATGGTAATCCTGATGTCTTGTGCTCCCCACTA
EST: TGCTGCTATTGCG TTCCAATATGGTAATCCTGATGTCTTGTGCTCCCCACTAGCTGAAGCAAAGEST: gi|67038480|gb|CO464800.1|CO464800
genomic: TGCTGCTATTGCGgtatgatcca ... ccatttgcagTTCCAATATGGTAATCCTGATGTCTTGTGCTCCCCACTAGCTGAAGCAAAG
EST: AAAATGATGGTGACTTCCTCTACTTACTGGCAGATGCTGCTGCTATTGCG TTCCAATATGGTAATCCTGATGTCTTGTGCTCCCCACTAGCTGAAGCAAAGEST: gi|31355151|gb|CD439508.1|CD439508
genomic: AAAATGATGGTGACTTCCTCTACTTACTGGCAGATGCTGCTGCTATTGCGgtatgatcca ... ccatttgcagTTCCAATATGGTAATCCTGATGTCTTGTGCTCCCCACTAGCTGAAGCAAAG
EST: AAAATGATGGTGACTTCCTCTACTTACTGGCAGATGCTGCTGCTATTGCG TTCCAATATGGTAATCCTGATGTCTTGTGCTCCCCACTAGCTGAAGCAAAG
genomic: AAAATGATGGTGACTTCCTCTACTTACTGGCAGATGCTGCTGCTATTGCGgtatgatcca ... ccatttgcagTTCCAATATGGTAATCCTGATGTCTTGTGCTCCCCACTAGCTGAAGCAAAG
tgacctcattatttgttgaaaacaagtgctcattgagaggctataccatttgcagTTCCAATATGGTAATCCTGATGTCTTGTGCTCCCCACTAGCTGAAGCAAAGAAGAATGGGACAGATTTGGTG
ttttgac putative branch site (score: 65)
attatttgttgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatccatccacatctctttttgacctcattatttgttgaaaacaagtgctcattgagaggctataccatttgcagTTCCAATATGGTAATCCTGATGTCTTGTGCTCCCCACTAGCTGAAGCAAAGAAGAATGGGACAGATTTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG