1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaagtagaaaaagaaataaccaaatgaaatatctttaatcatgtcactcatgtattaatttacagatgcatctttattaagctaaaattttaccttacagAAACCTCAAGCGCCTCCAAGACCCAGCATTGCAAGTATCCCTCCATACCAGAAACCTTTAAACCCTTATGTTCGTCAACCATTCATCCCAAGAGAAGAAA
species | Zea mays |
transcript | GRMZM2G031479_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
actcatgtattaatttacagatgcatctttattaagctaaaattttaccttacagAAACCTCAAGCGCCTCCAAGACCCAGCATTGCAAGTATCCCTCCATACCAGAAACCTTTAAACCCTTATGTTCGTCAACCATTCATCCCAAGAGAAGAAA
ttttacctt CT-rich tract
atctttattaagctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagtagaaaaagaaataaccaaatgaaatatctttaatcatgtcactcatgtattaatttacagatgcatctttattaagctaaaattttaccttacagAAACCTCAAGCGCCTCCAAGACCCAGCATTGCAAGTATCCCTCCATACCAGAAACCTTTAAACCCTTATGTTCGTCAACCATTCATCCCAAGAGAAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - -aaagaaa
- - - - - - - - -aaccaaa
- - - - - - - - - - - - - - - - - - - -catgtca
- - - - - - - - - - - - - - - - - - - - - - - - catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagatgc